Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   NR756_RS21920 Genome accession   NZ_CP102389
Coordinates   4699986..4702136 (-) Length   716 a.a.
NCBI ID   WP_284454989.1    Uniprot ID   -
Organism   Alloalcanivorax xenomutans strain AX     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4694986..4707136
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NR756_RS21905 (NR756_21890) - 4696981..4698333 (-) 1353 WP_416391357.1 SPOR domain-containing protein -
  NR756_RS21910 (NR756_21895) aroB 4698320..4699402 (-) 1083 WP_416391359.1 3-dehydroquinate synthase -
  NR756_RS21915 (NR756_21900) aroK 4699453..4699944 (-) 492 WP_022995174.1 shikimate kinase AroK -
  NR756_RS21920 (NR756_21905) pilQ 4699986..4702136 (-) 2151 WP_284454989.1 type IV pilus secretin PilQ Machinery gene
  NR756_RS21925 (NR756_21910) - 4702157..4702690 (-) 534 WP_022995172.1 pilus assembly protein PilP -
  NR756_RS21930 (NR756_21915) - 4702709..4703395 (-) 687 WP_022995171.1 type 4a pilus biogenesis protein PilO -
  NR756_RS21935 (NR756_21920) - 4703382..4703966 (-) 585 WP_022995170.1 PilN domain-containing protein -
  NR756_RS21940 (NR756_21925) pilM 4703963..4705030 (-) 1068 WP_026948241.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 716 a.a.        Molecular weight: 78017.35 Da        Isoelectric Point: 4.5897

>NTDB_id=716791 NR756_RS21920 WP_284454989.1 4699986..4702136(-) (pilQ) [Alloalcanivorax xenomutans strain AX]
MKICNAIKNRFAPRRWGIRVLALLACCTASLASAATITALDANMLPGDGMEVRVRFDGAAPEVKGYSIERPARIALDLVG
ADSALKTRQHNLGTGNARSVTVVEAKNRTRLIFNLDQLTGYSTEVEGQELVVVLGRDRAPAGDPARADQEAAAAPPRGAQ
ESIRNIDFRRGSDGEGRVVVTLSKPSIPVDVKEEGGRIQARFVGAGVGNELVRRLDVTDFATPVQYVETRSDDGSTVITI
EPTGTWEYLAYQADNEFSINIKPLTRGEAERKKRESFKYTGEKLSLNFQDIEVRSVLQLIADFTELNLVASDTVTGKITL
RLQSVPWDQALDLILKTKGLDKRKVGNVLLVAPADEIAAREQLELESQKKIASLAPLRTEFISINYARAEELKTLITGES
GATALISERGSVSVDQRTNTLIIQDTVAKLQEIRDLIQQLDIPVQQVLIEARVVVATTDLSDEFGVRWGGLGYDGNSLAN
DGRSMAISGRLTSLRELHYANVDRDDDGSLGEMEEFDEDTNNDMIVDMGVDSADATRFAIGFTSLSSGLIELELSALESE
GRGELVATPKVLTADQQPAVIASGQQIPFNVATSSGATAVEFIEAELRLEVTPQVTPEGDVIMQLKVNNDALGSDLDNPT
ISTNRVETTVLVNDGETVVLGGIFQQEQINSLIKTPFLGDIPWLGALFRKKVKRDSKQELLIFITPRLVKETMARR

Nucleotide


Download         Length: 2151 bp        

>NTDB_id=716791 NR756_RS21920 WP_284454989.1 4699986..4702136(-) (pilQ) [Alloalcanivorax xenomutans strain AX]
ATGAAGATCTGCAATGCAATAAAAAACCGATTCGCTCCCCGGCGCTGGGGAATCCGGGTGCTGGCGCTGCTGGCTTGCTG
CACCGCCTCGCTGGCGTCGGCGGCCACCATTACCGCCCTCGACGCCAACATGCTGCCGGGGGACGGCATGGAAGTGAGAG
TGCGCTTTGATGGCGCCGCGCCGGAGGTGAAGGGCTACAGCATCGAACGCCCGGCCCGCATCGCTCTCGACCTGGTGGGC
GCGGACAGCGCCCTGAAAACCCGCCAACACAATCTGGGCACCGGCAATGCCCGCAGTGTCACCGTGGTGGAGGCGAAGAA
TCGCACCCGGCTGATCTTCAATCTGGATCAACTGACCGGTTACAGCACCGAAGTGGAAGGGCAGGAGCTGGTGGTGGTGC
TCGGCCGCGATCGTGCGCCGGCCGGTGATCCGGCCAGGGCGGATCAGGAAGCCGCCGCCGCGCCGCCTCGAGGCGCGCAG
GAGAGCATTCGCAACATCGATTTCCGCCGCGGCAGTGACGGCGAAGGCCGTGTCGTGGTGACACTGTCGAAACCGTCCAT
TCCGGTGGACGTGAAGGAAGAAGGCGGCCGTATCCAGGCGCGCTTCGTGGGCGCCGGGGTTGGCAATGAACTGGTGCGCC
GTCTCGACGTCACCGATTTCGCCACGCCGGTACAGTATGTGGAAACCCGCAGCGATGACGGTAGCACGGTGATCACCATC
GAACCCACTGGCACCTGGGAATATCTGGCCTATCAGGCGGACAACGAGTTCAGCATCAATATCAAGCCGCTGACCCGCGG
CGAAGCGGAACGCAAGAAGCGTGAGTCCTTCAAGTACACCGGTGAGAAGCTGTCACTGAACTTCCAGGACATCGAGGTGC
GTTCGGTGCTGCAGTTGATCGCCGATTTCACTGAGCTGAACCTGGTGGCTTCCGATACGGTGACGGGCAAGATTACTTTG
CGGCTGCAGAGCGTGCCCTGGGATCAGGCTCTGGACCTGATCCTCAAGACCAAAGGGCTGGATAAACGCAAGGTGGGCAA
TGTGCTGCTGGTGGCGCCGGCGGACGAGATCGCCGCGCGCGAACAGCTGGAGCTGGAAAGCCAGAAGAAGATCGCCTCAC
TGGCGCCGCTGCGCACGGAGTTCATCAGCATCAACTACGCTCGCGCGGAGGAACTGAAGACACTGATTACCGGGGAAAGC
GGCGCCACCGCGCTGATCAGCGAGCGCGGTTCGGTATCCGTGGACCAGCGCACCAACACCCTGATCATCCAGGACACCGT
GGCCAAGCTGCAGGAGATTCGTGATCTGATCCAGCAACTGGACATTCCGGTCCAGCAGGTGCTGATCGAGGCGCGGGTGG
TGGTGGCCACCACCGATCTGTCCGATGAGTTCGGGGTTCGTTGGGGCGGTCTCGGTTACGACGGCAATTCTCTCGCCAAT
GATGGCCGTTCCATGGCGATTTCCGGCCGCCTCACCTCCTTGCGGGAGCTGCATTACGCCAACGTTGACCGTGATGACGA
CGGCTCCCTGGGGGAAATGGAGGAATTCGACGAGGACACCAATAACGACATGATCGTCGACATGGGAGTGGATTCCGCCG
ATGCCACCCGTTTCGCCATTGGTTTCACCTCACTGAGCTCCGGACTGATCGAGCTGGAGCTGTCGGCGCTGGAATCCGAG
GGGAGGGGGGAGCTGGTGGCCACGCCCAAGGTGCTCACCGCGGATCAGCAGCCGGCGGTGATCGCCTCCGGTCAGCAGAT
CCCGTTCAACGTGGCCACCTCCTCCGGCGCCACCGCGGTGGAGTTCATCGAGGCGGAGTTGCGCTTGGAAGTGACGCCGC
AGGTGACCCCGGAAGGGGATGTGATCATGCAGCTCAAGGTCAACAACGATGCCCTGGGCTCGGATCTGGACAACCCCACC
ATCAGCACCAACCGGGTTGAGACCACGGTGTTGGTGAATGACGGCGAAACCGTGGTTTTGGGCGGCATTTTCCAGCAGGA
ACAGATAAACTCCCTGATCAAAACCCCCTTCCTGGGTGATATTCCCTGGTTGGGAGCCCTGTTCCGCAAGAAAGTGAAGC
GTGACAGCAAGCAGGAATTGCTGATATTCATCACGCCACGCTTGGTAAAAGAGACAATGGCCCGTCGGTGA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(307-353)

AMIN domain (AMIN)

(48-133)

Bacterial type II/III secretion system short domain (Secretin_N)

(380-446)

Bacterial type II and III secretion system protein (Secretin)

(556-710)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

49.16

99.721

0.49
  comQ Acinetobacter baylyi ADP1

41.828

100

0.422
  pilQ Acinetobacter baumannii strain A118

40.706

100

0.419
  pilQ Acinetobacter baumannii D1279779

40.706

100

0.419
  pilQ Legionella pneumophila strain Lp02

37.807

96.788

0.366
  pilQ Legionella pneumophila strain ERS1305867

38.158

95.531

0.365