Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   NRZ30_RS09055 Genome accession   NZ_CP102367
Coordinates   2007912..2008232 (+) Length   106 a.a.
NCBI ID   WP_033114923.1    Uniprot ID   A0AAQ0EDI8
Organism   Aeromonas jandaei strain BC17     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2002912..2013232
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NRZ30_RS09040 (NRZ30_09040) yfbV 2003390..2003830 (-) 441 WP_043851809.1 terminus macrodomain insulation protein YfbV -
  NRZ30_RS09045 (NRZ30_09045) - 2004135..2005337 (+) 1203 WP_040065015.1 acetate kinase -
  NRZ30_RS09050 (NRZ30_09050) pta 2005393..2007573 (+) 2181 WP_041210398.1 phosphate acetyltransferase -
  NRZ30_RS09055 (NRZ30_09055) comEA/comE1 2007912..2008232 (+) 321 WP_033114923.1 ComEA family DNA-binding protein Machinery gene
  NRZ30_RS09060 (NRZ30_09060) galU 2008328..2009239 (+) 912 WP_033114924.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  NRZ30_RS09065 (NRZ30_09065) - 2009453..2010850 (+) 1398 WP_215807035.1 peptide MFS transporter -
  NRZ30_RS09070 (NRZ30_09070) - 2010939..2011910 (-) 972 WP_041210394.1 response regulator -
  NRZ30_RS09075 (NRZ30_09075) - 2012150..2012839 (+) 690 WP_268018088.1 DnaT-like ssDNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11338.19 Da        Isoelectric Point: 10.0127

>NTDB_id=716522 NRZ30_RS09055 WP_033114923.1 2007912..2008232(+) (comEA/comE1) [Aeromonas jandaei strain BC17]
MRKNSLSIIMLLSALPLFTQPSLAADKVAPKQATTVAAKQESGKVDINTATLAELTNLKGIGDKKAQAIVDYREKQGKFT
SVDQLVDVNGIGPATLEANRDMIIVK

Nucleotide


Download         Length: 321 bp        

>NTDB_id=716522 NRZ30_RS09055 WP_033114923.1 2007912..2008232(+) (comEA/comE1) [Aeromonas jandaei strain BC17]
ATGCGTAAAAACAGCTTGTCCATCATCATGTTGCTCTCCGCCCTCCCGTTGTTCACCCAGCCCTCACTGGCGGCAGACAA
GGTCGCACCGAAACAGGCCACCACGGTTGCCGCCAAGCAGGAGAGCGGCAAAGTGGATATCAATACGGCAACCCTTGCCG
AGCTCACCAACCTCAAGGGAATTGGTGACAAGAAGGCACAAGCCATCGTCGACTATCGCGAAAAACAGGGGAAATTTACC
TCAGTTGATCAACTGGTTGATGTTAACGGCATCGGCCCGGCCACGCTGGAAGCCAACCGTGACATGATCATCGTCAAATA
A

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(42-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

47.826

100

0.519
  comEA Vibrio cholerae C6706

50.485

97.17

0.491
  comEA Vibrio cholerae strain A1552

50.485

97.17

0.491
  comE1/comEA Haemophilus influenzae Rd KW20

43.75

100

0.462
  comEA Vibrio parahaemolyticus RIMD 2210633

45.455

93.396

0.425
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

38.235

96.226

0.368