Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   NQZ90_RS10680 Genome accession   NZ_CP102148
Coordinates   2207724..2208920 (+) Length   398 a.a.
NCBI ID   WP_257110259.1    Uniprot ID   A0AAW9DHJ7
Organism   Streptococcus suis strain DNC15     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 2202724..2213920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ90_RS10640 (NQZ90_10640) - 2203029..2204273 (+) 1245 WP_024407918.1 replication initiation factor domain-containing protein -
  NQZ90_RS10645 (NQZ90_10645) - 2204336..2204674 (+) 339 WP_024407917.1 DUF771 domain-containing protein -
  NQZ90_RS10650 (NQZ90_10650) - 2204737..2205858 (+) 1122 WP_014638877.1 site-specific integrase -
  NQZ90_RS10670 (NQZ90_10670) - 2206363..2207046 (-) 684 WP_024379536.1 YoaK family protein -
  NQZ90_RS10675 (NQZ90_10675) rlmH 2207071..2207550 (-) 480 WP_257110258.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  NQZ90_RS10680 (NQZ90_10680) htrA 2207724..2208920 (+) 1197 WP_257110259.1 S1C family serine protease Regulator
  NQZ90_RS10685 (NQZ90_10685) spo0J 2208981..2209745 (+) 765 WP_257110260.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 398 a.a.        Molecular weight: 41822.88 Da        Isoelectric Point: 4.5454

>NTDB_id=715028 NQZ90_RS10680 WP_257110259.1 2207724..2208920(+) (htrA) [Streptococcus suis strain DNC15]
MERIPYMKKYLKFAILFVIGFFGGIIGALSASFFQPQVQQANSAITSVSNVQYNNETSTTKAVEKVQNAVVSVINYQKSA
NNSLGAIFGNIESSDELAVAGEGSGVIYKKDGQYAYIVTNTHVINNAEKIDILLASGEKISGELVGSDTYSDIAVIKISA
DKVTAVAEFADSDTIKVGETAIAIGSPLGSVYANTVTQGIISSLSRTVTSQSEDGQTISTNAIQTDTAINPGNSGGPLIN
IQGQVIGITSSKITSSSVSSSGVAVEGMGFAIPANDAVAIINQLEKAGKVSRPALGVHMVNLTTLSTSQLEKAGLSNTEL
TSGVVIVSTQSGLPADGKLETFDVITEIDGETIQNKSDLQSALYKHQIGDTITVTYYRNNQKQTVDIKLTHSTEELSE

Nucleotide


Download         Length: 1197 bp        

>NTDB_id=715028 NQZ90_RS10680 WP_257110259.1 2207724..2208920(+) (htrA) [Streptococcus suis strain DNC15]
ATGGAAAGGATTCCTTATATGAAAAAATATTTGAAATTTGCGATTTTATTTGTAATTGGATTTTTTGGGGGTATTATTGG
GGCCTTATCAGCATCTTTCTTCCAACCACAGGTTCAACAAGCAAATTCTGCTATCACTAGTGTCAGCAATGTTCAATACA
ATAATGAAACTTCCACCACAAAAGCTGTAGAGAAAGTACAAAATGCTGTTGTGTCTGTTATTAATTACCAAAAATCAGCC
AACAATAGTCTTGGTGCTATCTTTGGAAATATTGAATCATCTGACGAACTAGCTGTTGCTGGAGAGGGGTCTGGGGTTAT
CTATAAAAAAGATGGTCAATATGCCTATATTGTGACAAATACGCATGTCATTAATAACGCAGAAAAGATTGATATTCTTT
TAGCATCTGGAGAAAAAATCAGCGGTGAACTCGTTGGTTCCGATACCTATTCTGATATAGCTGTTATAAAAATATCAGCA
GATAAAGTCACTGCTGTTGCTGAATTTGCTGATTCCGATACAATTAAAGTTGGAGAAACTGCTATCGCAATTGGTAGTCC
CCTAGGTAGCGTCTACGCTAATACAGTTACTCAAGGTATTATTTCTAGTCTAAGTCGGACAGTTACTTCACAATCAGAAG
ATGGTCAAACAATCTCAACCAACGCTATTCAAACCGATACAGCTATCAACCCTGGAAACTCTGGAGGACCGTTGATTAAT
ATCCAAGGACAAGTTATTGGTATCACCTCTAGCAAAATCACCTCAAGTTCTGTAAGTAGCTCAGGTGTGGCTGTGGAAGG
TATGGGATTCGCTATTCCTGCAAATGATGCCGTAGCCATTATCAATCAACTTGAGAAAGCTGGAAAAGTTAGCCGACCTG
CTCTTGGAGTTCATATGGTTAACTTGACGACCTTGTCAACTAGTCAATTAGAAAAGGCTGGATTATCAAATACGGAATTA
ACATCCGGTGTCGTAATTGTCTCTACACAAAGTGGACTACCTGCAGATGGAAAATTAGAAACTTTTGATGTCATTACTGA
GATTGACGGAGAAACTATTCAAAATAAGAGTGATCTCCAAAGCGCTCTCTACAAACATCAAATTGGAGACACAATCACTG
TAACTTATTACCGCAATAATCAGAAACAAACTGTTGACATTAAGTTGACACATTCTACAGAAGAACTTAGTGAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

60.453

99.749

0.603

  htrA Streptococcus gordonii str. Challis substr. CH1

60.506

99.246

0.6

  htrA Streptococcus pneumoniae Rx1

57.506

98.744

0.568

  htrA Streptococcus pneumoniae D39

57.506

98.744

0.568

  htrA Streptococcus pneumoniae R6

57.506

98.744

0.568

  htrA Streptococcus pneumoniae TIGR4

57.506

98.744

0.568

  htrA Streptococcus mitis NCTC 12261

57.506

98.744

0.568