Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NQZ90_RS04485 Genome accession   NZ_CP102148
Coordinates   923093..923935 (+) Length   280 a.a.
NCBI ID   WP_024388700.1    Uniprot ID   -
Organism   Streptococcus suis strain DNC15     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 918093..928935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ90_RS04450 (NQZ90_04450) ylqF 918095..918946 (+) 852 WP_024395835.1 ribosome biogenesis GTPase YlqF -
  NQZ90_RS04455 (NQZ90_04455) - 918933..919706 (+) 774 WP_105141190.1 ribonuclease HII -
  NQZ90_RS04460 (NQZ90_04460) - 919709..920719 (+) 1011 WP_105141189.1 YdcF family protein -
  NQZ90_RS04465 (NQZ90_04465) - 920752..921402 (-) 651 WP_002936498.1 hemolysin III family protein -
  NQZ90_RS04470 (NQZ90_04470) - 921392..921943 (-) 552 WP_105154869.1 DUF1836 domain-containing protein -
  NQZ90_RS04475 (NQZ90_04475) - 922040..922351 (-) 312 WP_024395839.1 rhodanese-like domain-containing protein -
  NQZ90_RS04480 (NQZ90_04480) - 922479..923036 (+) 558 WP_024410060.1 sugar O-acetyltransferase -
  NQZ90_RS04485 (NQZ90_04485) dprA 923093..923935 (+) 843 WP_024388700.1 DNA-processing protein DprA Machinery gene
  NQZ90_RS04490 (NQZ90_04490) topA 924028..926121 (+) 2094 WP_044769796.1 type I DNA topoisomerase -
  NQZ90_RS04495 (NQZ90_04495) rplJ 926698..927192 (+) 495 WP_002936486.1 50S ribosomal protein L10 -
  NQZ90_RS04500 (NQZ90_04500) rplL 927258..927623 (+) 366 WP_002936483.1 50S ribosomal protein L7/L12 -
  NQZ90_RS04505 (NQZ90_04505) - 927823..927990 (+) 168 WP_032497901.1 hypothetical protein -
  NQZ90_RS04510 (NQZ90_04510) - 927993..928808 (+) 816 WP_024408847.1 replication initiator protein A -

Sequence

Protein


Download         Length: 280 a.a.        Molecular weight: 31220.06 Da        Isoelectric Point: 8.4451

>NTDB_id=715011 NQZ90_RS04485 WP_024388700.1 923093..923935(+) (dprA) [Streptococcus suis strain DNC15]
MNNFELFKWKKAGLTNLNVNKVLAYQEKHGKKLTLRNVAVVSECKNPVLFMENYKNLDTKACREEFNKYPSFSILDDIYP
LALKQIYNPPVLLFYQGDLELLEKSKLAVVGTRNASKNGIQSVQKIIKELSNRFVIVSGLARGIDTAAHIASLKNGGQTI
AVIGTGLDNIYPKENKDLQTYIGKHHLVLTEYEAGAQPLKYHFPERNRIIAGLVEGLVVCEAKMRSGSLITCERALEEGR
EVYAIPGSIMDGKSDGCHHLIQEGAKCVTSGLDIISEYQF

Nucleotide


Download         Length: 843 bp        

>NTDB_id=715011 NQZ90_RS04485 WP_024388700.1 923093..923935(+) (dprA) [Streptococcus suis strain DNC15]
ATGAATAATTTTGAATTGTTTAAATGGAAAAAAGCAGGTTTGACCAATCTTAATGTGAATAAAGTTTTGGCCTATCAAGA
AAAACACGGTAAAAAATTGACCTTGCGAAATGTCGCTGTAGTGTCTGAATGTAAAAATCCAGTGCTATTTATGGAAAATT
ATAAGAATCTAGATACAAAAGCCTGTCGCGAGGAATTTAATAAGTATCCATCATTTTCAATTTTAGATGACATCTATCCT
TTGGCGCTCAAACAGATTTACAATCCACCTGTACTTTTGTTTTATCAAGGGGATTTAGAATTGCTAGAAAAATCAAAGCT
GGCAGTTGTTGGTACTCGAAATGCCAGCAAAAATGGTATCCAATCTGTTCAGAAAATTATCAAAGAATTGAGCAATCGTT
TTGTCATTGTTAGTGGTTTGGCAAGAGGAATTGATACAGCTGCTCACATCGCCAGTTTGAAAAATGGAGGCCAAACCATT
GCTGTAATCGGAACAGGTTTAGATAATATTTATCCAAAAGAAAATAAGGATTTGCAGACCTATATCGGAAAACACCATTT
GGTGCTGACAGAGTATGAAGCAGGTGCTCAGCCACTCAAATACCATTTCCCAGAACGCAATCGCATCATTGCTGGATTGG
TAGAAGGTCTGGTAGTCTGCGAAGCTAAAATGCGGTCTGGTAGCTTGATTACCTGCGAACGTGCCTTGGAAGAAGGAAGA
GAAGTCTATGCTATTCCAGGTTCCATTATGGACGGAAAATCAGATGGTTGTCATCATCTGATTCAAGAGGGGGCAAAGTG
CGTAACATCAGGCTTGGACATCATTTCTGAGTATCAATTTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-269)

DNA processing protein A sterile alpha motif domain (SAM_DprA)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Streptococcus mutans UA159

70

100

0.7
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

63.571

100

0.636
  dprA/cilB/dalA Streptococcus pneumoniae D39

63.571

100

0.636
  dprA/cilB/dalA Streptococcus pneumoniae R6

63.571

100

0.636
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

63.571

100

0.636
  dprA/cilB/dalA Streptococcus mitis SK321

63.571

100

0.636
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

63.571

100

0.636
  dprA Lactococcus lactis subsp. cremoris KW2

60

100

0.6
  dprA Legionella pneumophila strain ERS1305867

42.105

88.214

0.371
  dprA Bacillus subtilis subsp. subtilis str. 168

50.746

71.786

0.364