Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NQZ91_RS03080 Genome accession   NZ_CP102145
Coordinates   638606..639448 (-) Length   280 a.a.
NCBI ID   WP_257117839.1    Uniprot ID   -
Organism   Streptococcus suis strain DNS20     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 633606..644448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ91_RS03050 (NQZ91_03050) - 633798..634172 (+) 375 WP_257117834.1 hypothetical protein -
  NQZ91_RS03055 (NQZ91_03055) - 634220..634546 (+) 327 WP_105110578.1 hypothetical protein -
  NQZ91_RS03060 (NQZ91_03060) - 634600..634872 (-) 273 WP_105110579.1 hypothetical protein -
  NQZ91_RS03065 (NQZ91_03065) - 634884..635387 (-) 504 WP_257104352.1 hypothetical protein -
  NQZ91_RS03070 (NQZ91_03070) - 635490..636287 (+) 798 WP_257117836.1 XRE family transcriptional regulator -
  NQZ91_RS03075 (NQZ91_03075) topA 636421..638514 (-) 2094 WP_257117837.1 type I DNA topoisomerase -
  NQZ91_RS03080 (NQZ91_03080) dprA 638606..639448 (-) 843 WP_257117839.1 DNA-processing protein DprA Machinery gene
  NQZ91_RS03085 (NQZ91_03085) - 639592..639852 (-) 261 WP_105122788.1 metal-sensitive transcriptional regulator -
  NQZ91_RS03090 (NQZ91_03090) - 639963..640295 (+) 333 WP_257104349.1 rhodanese-like domain-containing protein -
  NQZ91_RS03095 (NQZ91_03095) - 640296..641945 (+) 1650 WP_257117840.1 FAD-dependent oxidoreductase -
  NQZ91_RS03100 (NQZ91_03100) - 642029..642490 (+) 462 WP_105122785.1 DUF1836 domain-containing protein -
  NQZ91_RS03105 (NQZ91_03105) - 642493..643146 (+) 654 WP_257117841.1 hemolysin III family protein -

Sequence

Protein


Download         Length: 280 a.a.        Molecular weight: 31197.16 Da        Isoelectric Point: 8.2281

>NTDB_id=714932 NQZ91_RS03080 WP_257117839.1 638606..639448(-) (dprA) [Streptococcus suis strain DNS20]
MNNFDIFKLKKAGLTNLNIHKILVYQEKFDKKLSLRNMAVVSECKNPILFMENYKNLDIKACREEFNRFPSFSILDDIYP
LALKEIYNPPVLLFYQGDLDLLDKPKLGVVGTRNASKNGIQSVQKIIKELQNRYVIVSGLARGIDTAAHIASLKNGGQTI
AVIGTGLDVSYPKENKDLQSYIGKHHLVLTEYGPGEQPLKFHFPERNRIIAGLVGGLVVCEAKMRSGSLITCERALEEGR
EIFAIPGSILDGKSDGCHHLIQEGAKCVTSGLDIISDYQF

Nucleotide


Download         Length: 843 bp        

>NTDB_id=714932 NQZ91_RS03080 WP_257117839.1 638606..639448(-) (dprA) [Streptococcus suis strain DNS20]
ATGAATAATTTTGATATTTTTAAGTTGAAAAAGGCTGGGCTGACCAATCTCAATATTCACAAAATCTTGGTTTACCAAGA
AAAGTTTGATAAAAAGCTATCCTTGCGCAACATGGCTGTCGTCTCTGAATGCAAAAATCCCATTCTCTTTATGGAAAATT
ATAAAAATTTGGACATCAAGGCCTGCCGTGAGGAGTTTAATCGCTTTCCATCCTTTTCGATTTTGGATGACATTTATCCC
TTGGCCCTCAAGGAAATTTACAATCCGCCAGTCTTGCTCTTTTACCAAGGAGACCTTGACTTGCTAGATAAACCAAAGTT
GGGCGTGGTTGGTACGCGAAATGCCAGTAAAAACGGCATCCAGTCAGTCCAGAAGATTATTAAGGAACTTCAGAATCGCT
ATGTCATTGTCAGCGGCCTGGCGCGTGGAATTGACACTGCGGCCCATATCGCCAGCCTAAAAAATGGTGGACAGACCATT
GCGGTCATCGGTACAGGCTTGGATGTGTCGTATCCCAAGGAAAATAAAGATTTGCAGTCCTATATAGGCAAGCATCATCT
GGTCTTAACAGAGTACGGGCCTGGTGAACAGCCGCTCAAGTTTCATTTCCCAGAGCGTAATAGGATTATCGCTGGTTTGG
TCGGCGGACTGGTGGTCTGCGAGGCAAAAATGCGGTCGGGTAGCCTGATTACTTGTGAGCGTGCCCTGGAAGAAGGGCGG
GAAATATTTGCCATTCCAGGCTCCATTTTAGACGGAAAATCTGACGGATGTCATCATTTGATTCAAGAGGGCGCAAAGTG
CGTCACATCGGGCTTGGACATCATTTCTGACTATCAATTTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-269)

DNA processing protein A sterile alpha motif domain (SAM_DprA)

(1-60)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Streptococcus mutans UA159

71.071

100

0.711
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

66.786

100

0.668
  dprA/cilB/dalA Streptococcus pneumoniae D39

66.786

100

0.668
  dprA/cilB/dalA Streptococcus pneumoniae R6

66.786

100

0.668
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

66.786

100

0.668
  dprA/cilB/dalA Streptococcus mitis SK321

66.429

100

0.664
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

66.071

100

0.661
  dprA Lactococcus lactis subsp. cremoris KW2

60.714

100

0.607
  dprA Bacillus subtilis subsp. subtilis str. 168

48.198

79.286

0.382
  dprA Legionella pneumophila strain ERS1305867

40.891

88.214

0.361