Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   NQZ93_RS00755 Genome accession   NZ_CP102141
Coordinates   119781..120818 (+) Length   345 a.a.
NCBI ID   WP_255195823.1    Uniprot ID   -
Organism   Streptococcus suis strain DNR48     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 114781..125818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ93_RS00740 (NQZ93_00740) - 117483..117848 (+) 366 WP_002936568.1 DUF1033 family protein -
  NQZ93_RS00745 (NQZ93_00745) - 117883..118833 (-) 951 WP_257115308.1 S66 peptidase family protein -
  NQZ93_RS00750 (NQZ93_00750) comYA 118919..119869 (+) 951 WP_024382125.1 competence type IV pilus ATPase ComGA Machinery gene
  NQZ93_RS00755 (NQZ93_00755) comYB 119781..120818 (+) 1038 WP_255195823.1 competence type IV pilus assembly protein ComGB Machinery gene
  NQZ93_RS00760 (NQZ93_00760) comYC 120820..121101 (+) 282 WP_024382124.1 competence type IV pilus major pilin ComGC Machinery gene
  NQZ93_RS00765 (NQZ93_00765) comGD 121082..121489 (+) 408 WP_024382123.1 competence type IV pilus minor pilin ComGD -
  NQZ93_RS00770 (NQZ93_00770) comYE 121461..121754 (+) 294 WP_024382122.1 competence type IV pilus minor pilin ComGE Machinery gene
  NQZ93_RS00775 (NQZ93_00775) comGF/cglF 121741..122175 (+) 435 WP_024382121.1 competence type IV pilus minor pilin ComGF Machinery gene
  NQZ93_RS00780 (NQZ93_00780) comGG 122153..122563 (+) 411 WP_024382120.1 competence type IV pilus minor pilin ComGG -
  NQZ93_RS00785 (NQZ93_00785) comYH 122620..123573 (+) 954 WP_257115309.1 class I SAM-dependent methyltransferase Machinery gene
  NQZ93_RS00790 (NQZ93_00790) - 123623..124810 (+) 1188 WP_024382118.1 acetate kinase -
  NQZ93_RS00795 (NQZ93_00795) - 125125..125676 (+) 552 WP_024382117.1 folate family ECF transporter S component -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 39014.08 Da        Isoelectric Point: 9.4805

>NTDB_id=714824 NQZ93_RS00755 WP_255195823.1 119781..120818(+) (comYB) [Streptococcus suis strain DNR48]
MRKLIAFLQQDISVLGRQKQKKLPLARQRKVIELFNNLFASGFHLGEIVDFLKRSQLLADLYTQVLSDGLLAGKPFSSLL
ADLRFSDAVVTQVALAEVHGNTSLSLSHIQSYLENVSKVRKKLIEVATYPIILLGFLFLIMLGLKNYLLPQLEEGNAATM
LINHLPTIFLSLCGLSLVAVLAGMVWFRKTNKIKAFSRLAALPFFGKLIQIYLTAYYAREWGSLIGQGLDLPQIVGLMQE
QQSQLFREIGQDLEQSLSNGQSFHEHIKTYAFFKRELSLIVEYGQVKSKLGGELTVYAAECWEDFFSRVNRAMQLIQPLV
FLFVALMVVLIYAAMLLPIYQNMEL

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=714824 NQZ93_RS00755 WP_255195823.1 119781..120818(+) (comYB) [Streptococcus suis strain DNR48]
ATGCGCAAATTGATCGCCTTTTTGCAGCAGGACATATCAGTCTTAGGCAGGCAGAAACAGAAAAAATTGCCCTTGGCTCG
CCAGCGTAAGGTCATTGAGCTTTTCAATAATCTTTTTGCTAGTGGTTTTCATCTGGGGGAGATTGTTGATTTCCTCAAAC
GCAGTCAGCTTCTGGCAGATCTCTATACCCAGGTCTTGTCAGACGGGTTGCTGGCAGGCAAACCCTTTTCGAGTTTACTG
GCAGATTTGCGGTTTTCAGATGCGGTGGTCACACAGGTGGCTCTGGCAGAAGTTCATGGTAATACCAGCCTGAGTTTGAG
CCATATCCAGTCCTATCTGGAAAATGTCAGCAAGGTTCGTAAAAAGCTGATTGAGGTGGCGACCTATCCGATTATCTTAC
TGGGTTTTCTGTTCTTGATTATGCTAGGCTTGAAAAACTATCTTCTGCCCCAGTTGGAGGAAGGCAATGCTGCGACCATG
CTAATTAACCATCTGCCGACTATCTTTTTATCCCTCTGTGGACTTAGTTTGGTGGCGGTCTTGGCTGGTATGGTTTGGTT
TCGCAAAACCAACAAAATCAAGGCATTTTCCCGCTTGGCAGCTCTGCCATTTTTCGGAAAACTCATCCAAATCTATCTGA
CGGCCTATTACGCCAGGGAGTGGGGAAGTTTGATTGGGCAAGGCTTGGACCTGCCACAGATTGTGGGCTTGATGCAGGAG
CAGCAATCGCAGCTCTTTCGGGAGATTGGGCAGGACCTGGAGCAGTCGCTTTCCAATGGTCAGAGCTTTCACGAACACAT
TAAGACCTACGCCTTTTTTAAGCGGGAGCTGAGTTTGATTGTCGAGTATGGTCAGGTCAAGTCCAAGTTGGGTGGCGAGT
TGACAGTTTATGCAGCCGAGTGTTGGGAGGATTTTTTCTCTCGGGTCAATAGAGCCATGCAGTTGATTCAACCGCTGGTC
TTTCTCTTTGTGGCCTTAATGGTCGTTCTCATCTACGCAGCCATGTTGCTGCCGATTTATCAAAATATGGAGTTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(33-150)

Type II secretion system (T2SS), protein F (T2SSF)

(218-338)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus gordonii str. Challis substr. CH1

63.743

99.13

0.632
  comGB/cglB Streptococcus mitis SK321

60.119

97.391

0.586
  comYB Streptococcus mutans UA140

58.944

98.841

0.583
  comYB Streptococcus mutans UA159

58.944

98.841

0.583
  comGB/cglB Streptococcus mitis NCTC 12261

59.701

97.101

0.58
  comGB/cglB Streptococcus pneumoniae Rx1

59.104

97.101

0.574
  comGB/cglB Streptococcus pneumoniae D39

59.104

97.101

0.574
  comGB/cglB Streptococcus pneumoniae R6

59.104

97.101

0.574
  comGB/cglB Streptococcus pneumoniae TIGR4

59.104

97.101

0.574
  comGB Lactococcus lactis subsp. cremoris KW2

50.742

97.681

0.496