Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   NQZ94_RS03200 Genome accession   NZ_CP102140
Coordinates   609272..609712 (+) Length   146 a.a.
NCBI ID   WP_257116265.1    Uniprot ID   -
Organism   Streptococcus suis strain DNC49     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 604272..614712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ94_RS03180 (NQZ94_03180) - 604545..605747 (+) 1203 WP_009909264.1 IS110-like element ISSsu7 family transposase -
  NQZ94_RS03185 (NQZ94_03185) - 606022..606654 (-) 633 WP_004194123.1 YigZ family protein -
  NQZ94_RS03190 (NQZ94_03190) comFA/cflA 606711..608003 (+) 1293 WP_004194121.1 DEAD/DEAH box helicase Machinery gene
  NQZ94_RS03195 (NQZ94_03195) - 608084..609028 (-) 945 WP_024409330.1 IS30 family transposase -
  NQZ94_RS03200 (NQZ94_03200) comFC/cflB 609272..609712 (+) 441 WP_257116265.1 ComF family protein Machinery gene
  NQZ94_RS03205 (NQZ94_03205) hpf 609789..610331 (+) 543 WP_004194117.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 17179.88 Da        Isoelectric Point: 9.8590

>NTDB_id=714785 NQZ94_RS03200 WP_257116265.1 609272..609712(+) (comFC/cflB) [Streptococcus suis strain DNC49]
MYQYNQAMAHYFSRYKFQGDYVLRNIFAKKLRIALSQFPDYTIVPIPISQKRLSERGFNQVEGLLDATNIPYQSLLGKYE
SQKQSSKNRAERLEAKQMFYLLDEKEVPEKILLFDDIYTTGATIQLAVELFMKIGRKEIKTFSLTR

Nucleotide


Download         Length: 441 bp        

>NTDB_id=714785 NQZ94_RS03200 WP_257116265.1 609272..609712(+) (comFC/cflB) [Streptococcus suis strain DNC49]
TTGTACCAATATAATCAAGCGATGGCACATTATTTTAGTCGCTACAAATTTCAAGGAGACTATGTTTTAAGAAATATTTT
TGCTAAAAAGCTTAGAATAGCGTTAAGCCAATTTCCTGACTACACAATTGTTCCCATACCAATTAGTCAAAAACGACTAT
CAGAACGCGGTTTTAATCAAGTGGAAGGACTTTTGGATGCTACAAATATTCCTTATCAGTCCCTTCTTGGAAAGTATGAA
AGCCAAAAACAATCATCTAAAAATCGTGCAGAGAGACTAGAAGCAAAACAGATGTTCTATCTATTAGATGAAAAAGAAGT
GCCAGAAAAAATATTATTATTCGACGATATATATACAACAGGAGCCACAATCCAACTTGCTGTAGAACTTTTCATGAAAA
TTGGTAGGAAAGAAATCAAAACATTTTCACTAACACGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.