Detailed information    

insolico Bioinformatically predicted

Overview

Name   htrA   Type   Regulator
Locus tag   NQZ84_RS10615 Genome accession   NZ_CP102094
Coordinates   2196176..2197372 (+) Length   398 a.a.
NCBI ID   WP_257049391.1    Uniprot ID   -
Organism   Streptococcus suis strain 12RC1     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2191176..2202372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ84_RS10585 (NQZ84_10585) - 2191834..2194413 (+) 2580 WP_257049394.1 YfhO family protein -
  NQZ84_RS10605 (NQZ84_10605) - 2194815..2195498 (-) 684 WP_053867304.1 YoaK family protein -
  NQZ84_RS10610 (NQZ84_10610) rlmH 2195523..2196002 (-) 480 WP_004194528.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  NQZ84_RS10615 (NQZ84_10615) htrA 2196176..2197372 (+) 1197 WP_257049391.1 S1C family serine protease Regulator
  NQZ84_RS10620 (NQZ84_10620) spo0J 2197433..2198197 (+) 765 WP_257049389.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence

Protein


Download         Length: 398 a.a.        Molecular weight: 41863.82 Da        Isoelectric Point: 4.4852

>NTDB_id=714325 NQZ84_RS10615 WP_257049391.1 2196176..2197372(+) (htrA) [Streptococcus suis strain 12RC1]
MERIPYMKKYLKFAILFVIGFFGGLIGALSASFFQPQIQQANSTITSVSNVQYNNETSTTKAVEKVQNAVVSVINYQKSA
NNSLGAIFGNIESSDELAVAGEGSGVIYKKDGQYAYVVTNTHVINNAEKIDILLASGEKISGELVGSDTYSDIAVIKISA
DKVTAVAEFADSDTIKVGETAIAIGSPLGSVYANTVTQGIISSLSRTVTSQSEDGQTISTNAIQTDTAINPGNSGGPLIN
IQGQVIGITSSKITSSSANSSGVAVEGLGFAIPANDAVAIINQLEKTGQVSRPALGVHMVNLTTLSTSQLEKAGLSNTEL
TSGVVIVSTQSGLPADGKLETFDVITEIDGETIQNKSDLQSALYKHQIGDTITVTYYRNNQKQTVDIKLTHSTEELSE

Nucleotide


Download         Length: 1197 bp        

>NTDB_id=714325 NQZ84_RS10615 WP_257049391.1 2196176..2197372(+) (htrA) [Streptococcus suis strain 12RC1]
ATGGAAAGGATTCCTTATATGAAAAAATATTTGAAATTTGCGATTCTATTTGTAATTGGATTTTTTGGTGGTCTTATCGG
GGCCTTATCAGCCTCTTTCTTCCAACCACAGATTCAACAAGCAAATTCTACTATCACTAGTGTCAGCAATGTTCAATACA
ATAATGAAACTTCCACCACAAAAGCTGTAGAGAAAGTACAAAATGCTGTTGTGTCTGTTATTAATTACCAAAAATCAGCC
AACAATAGTCTTGGTGCTATCTTTGGAAATATTGAATCATCTGACGAACTAGCTGTTGCTGGAGAGGGGTCTGGGGTTAT
CTATAAAAAAGATGGTCAATATGCCTATGTTGTGACAAATACGCATGTCATTAATAACGCAGAAAAGATTGATATTCTTT
TAGCATCTGGAGAAAAAATCAGCGGTGAACTCGTTGGTTCCGATACCTATTCTGATATAGCTGTTATAAAAATATCAGCA
GATAAAGTCACTGCTGTTGCTGAATTTGCTGATTCCGATACAATTAAAGTTGGAGAAACTGCTATCGCAATTGGTAGTCC
TCTAGGTAGCGTCTACGCTAATACAGTTACTCAAGGTATTATTTCTAGCCTAAGTCGGACAGTTACTTCACAATCAGAAG
ATGGTCAAACAATCTCAACCAACGCTATTCAAACTGATACAGCTATCAACCCTGGAAACTCTGGAGGACCATTGATTAAT
ATCCAAGGACAAGTTATTGGTATCACCTCTAGCAAAATTACCTCAAGTTCTGCAAATAGCTCAGGCGTGGCTGTAGAAGG
GTTGGGATTTGCTATTCCTGCAAATGATGCCGTAGCTATTATCAATCAGCTTGAAAAAACTGGACAAGTTAGCCGACCTG
CTCTTGGAGTTCATATGGTTAACTTGACGACCTTGTCAACTAGTCAATTGGAAAAAGCTGGATTATCAAATACGGAATTA
ACATCCGGTGTCGTAATTGTCTCTACACAAAGTGGACTACCTGCAGATGGAAAATTAGAAACTTTTGATGTCATTACTGA
GATTGACGGAGAAACTATTCAAAATAAGAGTGATCTCCAAAGTGCTCTCTACAAACATCAGATTGGAGACACAATCACTG
TAACTTATTACCGCAATAATCAGAAACAAACTGTTGACATTAAGTTGACACATTCTACAGAAGAACTTAGCGAATAA

Domains

Predicted by InterproScan.

Trypsin-like peptidase domain (Trypsin_2)

(103-248)

PDZ domain (PDZ_2)

(293-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

59.95

99.749

0.598
  htrA Streptococcus gordonii str. Challis substr. CH1

60.101

99.497

0.598
  htrA Streptococcus pneumoniae D39

57.506

98.744

0.568
  htrA Streptococcus pneumoniae TIGR4

57.506

98.744

0.568
  htrA Streptococcus mitis NCTC 12261

57.506

98.744

0.568
  htrA Streptococcus pneumoniae R6

57.506

98.744

0.568
  htrA Streptococcus pneumoniae Rx1

57.506

98.744

0.568