Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   NQZ84_RS10620 Genome accession   NZ_CP102094
Coordinates   2197433..2198197 (+) Length   254 a.a.
NCBI ID   WP_257049389.1    Uniprot ID   -
Organism   Streptococcus suis strain 12RC1     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2192433..2203197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ84_RS10605 (NQZ84_10605) - 2194815..2195498 (-) 684 WP_053867304.1 YoaK family protein -
  NQZ84_RS10610 (NQZ84_10610) rlmH 2195523..2196002 (-) 480 WP_004194528.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  NQZ84_RS10615 (NQZ84_10615) htrA 2196176..2197372 (+) 1197 WP_257049391.1 S1C family serine protease Regulator
  NQZ84_RS10620 (NQZ84_10620) spo0J 2197433..2198197 (+) 765 WP_257049389.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 29000.27 Da        Isoelectric Point: 9.4760

>NTDB_id=714326 NQZ84_RS10620 WP_257049389.1 2197433..2198197(+) (spo0J) [Streptococcus suis strain 12RC1]
MEELRTLNISEIHPNPYQPRIHFDEKELLELAQSIKENGLIQPIIVRKSSIIGYELLAGERRLRASQLAGLTTIPAVVKE
LTDDDLLYQAIIENLQRSNLNPIEEAASYQKLISRGLTHDEVAQIMGKSRPYISNLLRLLNLSSQTKQAVEEGKISQGHA
RQLVSFSEEKQAEWVQLILSKDLSVRTLEKLIAANKKKHTKLKQRDQFLKEQEDSLSKTLGTATKIIKKKNGSGEIRISF
NDFDEFERIINNFK

Nucleotide


Download         Length: 765 bp        

>NTDB_id=714326 NQZ84_RS10620 WP_257049389.1 2197433..2198197(+) (spo0J) [Streptococcus suis strain 12RC1]
ATGGAAGAATTACGTACACTAAATATTTCAGAAATCCATCCCAATCCCTATCAGCCAAGAATTCATTTTGATGAAAAGGA
GCTACTTGAGCTCGCTCAATCCATTAAGGAAAATGGCTTAATTCAACCAATTATTGTAAGAAAATCTTCTATTATCGGAT
ACGAATTATTAGCTGGAGAAAGAAGGTTGCGAGCCAGTCAATTAGCTGGACTGACTACAATACCAGCAGTGGTAAAGGAA
CTAACTGATGATGATTTACTCTATCAGGCTATCATAGAGAATCTGCAGCGTTCTAACTTAAATCCAATAGAAGAAGCAGC
CTCTTATCAAAAATTGATTAGTAGAGGGTTAACGCATGATGAAGTTGCTCAAATCATGGGAAAATCAAGACCATATATCA
GTAATTTATTGCGCCTACTAAATCTATCATCTCAGACTAAACAAGCTGTAGAAGAAGGAAAAATTTCACAAGGGCACGCG
CGACAATTGGTGTCATTTTCAGAAGAAAAGCAAGCCGAATGGGTTCAACTCATTTTATCAAAGGATTTAAGTGTGCGTAC
GCTTGAAAAATTAATAGCTGCAAATAAGAAAAAACACACTAAGCTTAAACAACGCGACCAATTTTTAAAAGAACAGGAAG
ATTCACTCAGTAAAACCCTTGGAACAGCTACAAAAATTATCAAGAAGAAAAACGGGAGCGGAGAAATTCGGATTAGCTTT
AATGATTTCGATGAATTCGAAAGAATTATCAACAATTTTAAATAG

Domains

Predicted by InterproScan.

HTH domain found in ParB protein (HTH_ParB)

(146-193)

ParB/Sulfiredoxin domain (ParB_N)

(7-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

55.159

99.213

0.547