Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   CHBNTHi_RS09690 Genome accession   NZ_AP018781
Coordinates   1937320..1937667 (-) Length   115 a.a.
NCBI ID   WP_181913754.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-V-1 isolate 13H43     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1932320..1942667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHBNTHi_RS09670 (CHBNV1_18550) bioB 1932709..1933710 (-) 1002 WP_005655985.1 biotin synthase BioB -
  CHBNTHi_RS09675 (CHBNV1_18560) thiQ 1933823..1934470 (-) 648 WP_105878385.1 thiamine ABC transporter ATP-binding protein -
  CHBNTHi_RS09680 (CHBNV1_18570) thiP 1934454..1936070 (-) 1617 WP_110437780.1 thiamine/thiamine pyrophosphate ABC transporter permease -
  CHBNTHi_RS09685 (CHBNV1_18580) thiB 1936075..1937073 (-) 999 WP_110437781.1 thiamine ABC transporter substrate binding subunit -
  CHBNTHi_RS09690 (CHBNV1_18590) comE1/comEA 1937320..1937667 (-) 348 WP_181913754.1 helix-hairpin-helix domain-containing protein Machinery gene
  CHBNTHi_RS09695 (CHBNV1_18600) ispH 1937836..1938780 (-) 945 WP_005647895.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  CHBNTHi_RS09700 (CHBNV1_18610) lspA 1938777..1939292 (-) 516 WP_005664259.1 signal peptidase II -
  CHBNTHi_RS09705 (CHBNV1_18620) - 1939362..1940921 (-) 1560 WP_110437782.1 phosphoethanolamine transferase -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12367.22 Da        Isoelectric Point: 8.0085

>NTDB_id=71332 CHBNTHi_RS09690 WP_181913754.1 1937320..1937667(-) (comE1/comEA) [Haemophilus influenzae strain CHBN-V-1 isolate 13H43]
MKLMKTLFTSFVLCGALVASSAFAEEKTAEQAVQPVVATQAEAQVAPATVSDKLNINTATASEIQKSLTGIGAKKAEAIV
QYREKHGNFTNVEQLLEVQGIGKATLEKNRDRIIF

Nucleotide


Download         Length: 348 bp        

>NTDB_id=71332 CHBNTHi_RS09690 WP_181913754.1 1937320..1937667(-) (comE1/comEA) [Haemophilus influenzae strain CHBN-V-1 isolate 13H43]
ATGAAATTAATGAAAACATTATTCACTTCATTTGTATTGTGTGGCGCGCTGGTTGCCTCTTCGGCTTTTGCTGAGGAAAA
AACTGCAGAGCAGGCTGTTCAACCTGTTGTAGCAACTCAAGCTGAAGCTCAAGTTGCACCAGCTACTGTGAGTGATAAAT
TGAATATCAATACGGCAACTGCCAGCGAAATTCAAAAATCTCTAACTGGCATTGGTGCGAAAAAAGCAGAAGCTATTGTG
CAATATCGTGAAAAACACGGTAATTTTACTAATGTAGAACAGCTTTTAGAAGTACAAGGAATTGGCAAAGCAACACTAGA
GAAAAATCGTGATCGTATAATCTTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

88.393

97.391

0.861
  comEA/comE1 Glaesserella parasuis strain SC1401

60.748

93.043

0.565
  comEA Vibrio cholerae C6706

43.636

95.652

0.417
  comEA Vibrio cholerae strain A1552

43.636

95.652

0.417
  comEA Vibrio campbellii strain DS40M4

39.286

97.391

0.383
  comEA Acinetobacter baylyi ADP1

37.607

100

0.383

Multiple sequence alignment