Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   NNG64_RS20100 Genome accession   NZ_CP101610
Coordinates   3488075..3488497 (-) Length   140 a.a.
NCBI ID   WP_269465406.1    Uniprot ID   -
Organism   Bacillus siamensis strain WYJ-E14     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3483075..3493497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NNG64_RS17350 (NNG64_17305) fliW 3483165..3483596 (-) 432 WP_016937778.1 flagellar assembly protein FliW -
  NNG64_RS17355 (NNG64_17310) - 3483626..3484195 (-) 570 WP_060964150.1 DUF6470 family protein -
  NNG64_RS17360 (NNG64_17315) flgL 3484286..3485203 (-) 918 WP_060964149.1 flagellar hook-associated protein FlgL -
  NNG64_RS17365 (NNG64_17320) flgK 3485216..3486733 (-) 1518 WP_060964148.1 flagellar hook-associated protein FlgK -
  NNG64_RS17370 (NNG64_17325) - 3486749..3487231 (-) 483 WP_060964147.1 flagellar protein FlgN -
  NNG64_RS17375 (NNG64_17330) flgM 3487246..3487512 (-) 267 WP_016937773.1 flagellar biosynthesis anti-sigma factor FlgM -
  NNG64_RS17380 (NNG64_17335) - 3487582..3488001 (-) 420 WP_047475784.1 TIGR03826 family flagellar region protein -
  NNG64_RS20100 comFC 3488075..3488497 (-) 423 WP_269465406.1 phosphoribosyltransferase family protein Machinery gene
  NNG64_RS17390 (NNG64_17345) - 3488770..3489054 (-) 285 WP_016937770.1 late competence development ComFB family protein -
  NNG64_RS17395 (NNG64_17350) comFA 3489112..3490497 (-) 1386 WP_060964145.1 DEAD/DEAH box helicase Machinery gene
  NNG64_RS17400 (NNG64_17355) - 3490605..3491453 (-) 849 WP_060964144.1 DegV family protein -
  NNG64_RS17405 (NNG64_17360) degU 3491551..3492240 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NNG64_RS17410 (NNG64_17365) degS 3492317..3493480 (-) 1164 WP_256076359.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 140 a.a.        Molecular weight: 15337.61 Da        Isoelectric Point: 9.9678

>NTDB_id=710896 NNG64_RS20100 WP_269465406.1 3488075..3488497(-) (comFC) [Bacillus siamensis strain WYJ-E14]
MTRFKFRGDAKIIQAFERDFAAGYKAAYPSNTHTLVPIPLSGERLAERGFNQSELLASLLGMPVIYPLIRLNNEKQSKKS
KTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEALLTAGKALSVSSFTLIRS

Nucleotide


Download         Length: 423 bp        

>NTDB_id=710896 NNG64_RS20100 WP_269465406.1 3488075..3488497(-) (comFC) [Bacillus siamensis strain WYJ-E14]
TTGACCCGGTTTAAATTTCGGGGTGATGCGAAAATCATTCAAGCATTTGAACGTGATTTTGCTGCCGGCTATAAAGCGGC
GTACCCGTCAAATACACATACCCTCGTCCCTATTCCGCTGAGCGGCGAACGGCTGGCGGAACGCGGATTCAATCAATCCG
AGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTACCCCCTCATCCGACTGAACAATGAAAAACAATCCAAAAAAAGC
AAAACAGAAAGGCTCTCCGCAGAAAAAAAGTTTTCAGCTGCTGAAAACTCCGCCGAAGGTATGAACGTCATTTTAATAGA
CGATATTTATACGACGGGCGCCACACTGCATCAAGCTGCCGAAGCTCTGCTGACAGCAGGCAAAGCGTTATCGGTCTCCT
CTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(54-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

66.429

100

0.664
  comFC/cflB Streptococcus mitis NCTC 12261

36.691

99.286

0.364
  comFC/cflB Streptococcus pneumoniae TIGR4

35.915

100

0.364
  comFC/cflB Streptococcus pneumoniae Rx1

35.915

100

0.364
  comFC/cflB Streptococcus pneumoniae D39

35.915

100

0.364
  comFC/cflB Streptococcus pneumoniae R6

35.915

100

0.364