Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   NNG64_RS17395 Genome accession   NZ_CP101610
Coordinates   3489112..3490497 (-) Length   461 a.a.
NCBI ID   WP_060964145.1    Uniprot ID   -
Organism   Bacillus siamensis strain WYJ-E14     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3484112..3495497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NNG64_RS17360 (NNG64_17315) flgL 3484286..3485203 (-) 918 WP_060964149.1 flagellar hook-associated protein FlgL -
  NNG64_RS17365 (NNG64_17320) flgK 3485216..3486733 (-) 1518 WP_060964148.1 flagellar hook-associated protein FlgK -
  NNG64_RS17370 (NNG64_17325) - 3486749..3487231 (-) 483 WP_060964147.1 flagellar protein FlgN -
  NNG64_RS17375 (NNG64_17330) flgM 3487246..3487512 (-) 267 WP_016937773.1 flagellar biosynthesis anti-sigma factor FlgM -
  NNG64_RS17380 (NNG64_17335) - 3487582..3488001 (-) 420 WP_047475784.1 TIGR03826 family flagellar region protein -
  NNG64_RS20100 comFC 3488075..3488497 (-) 423 WP_269465406.1 phosphoribosyltransferase family protein Machinery gene
  NNG64_RS17390 (NNG64_17345) - 3488770..3489054 (-) 285 WP_016937770.1 late competence development ComFB family protein -
  NNG64_RS17395 (NNG64_17350) comFA 3489112..3490497 (-) 1386 WP_060964145.1 DEAD/DEAH box helicase Machinery gene
  NNG64_RS17400 (NNG64_17355) - 3490605..3491453 (-) 849 WP_060964144.1 DegV family protein -
  NNG64_RS17405 (NNG64_17360) degU 3491551..3492240 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NNG64_RS17410 (NNG64_17365) degS 3492317..3493480 (-) 1164 WP_256076359.1 two-component sensor histidine kinase DegS Regulator
  NNG64_RS17415 (NNG64_17370) - 3493703..3494350 (+) 648 WP_007614107.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52385.60 Da        Isoelectric Point: 10.0159

>NTDB_id=710887 NNG64_RS17395 WP_060964145.1 3489112..3490497(-) (comFA) [Bacillus siamensis strain WYJ-E14]
MSEDASEFSEVRDFFYGRHLLRSEIPFSDQRINSFIEKEHITAEPSVIRRKNRYACRRCGQSDQACFAAFWAPSAKRHIT
YCRACVVMGRADELTSLYSWNQTSESSWEPVKLAWEGTLTDGQKQAAGALIKAIKEKQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFENVEVSALYGSSEDKGSLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKNNSALVYVTATPSDALKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLEKGKLPHSVTDWV
RQKLQSRLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVSKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGMTNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=710887 NNG64_RS17395 WP_060964145.1 3489112..3490497(-) (comFA) [Bacillus siamensis strain WYJ-E14]
ATGTCCGAAGATGCTTCAGAATTTTCAGAGGTGAGGGATTTCTTTTACGGCAGGCATTTGTTGAGATCTGAGATACCGTT
TTCAGATCAGCGTATCAATTCTTTTATAGAAAAAGAACATATAACGGCCGAGCCGTCTGTTATCCGCAGGAAAAACCGTT
ACGCCTGCCGCCGATGCGGCCAGTCTGACCAAGCCTGCTTTGCCGCATTCTGGGCGCCTTCTGCCAAAAGACATATTACC
TATTGCCGTGCCTGTGTCGTAATGGGAAGGGCTGATGAACTGACGTCATTATATTCTTGGAATCAAACCTCAGAAAGCAG
CTGGGAGCCTGTAAAGCTTGCTTGGGAAGGAACACTGACAGACGGACAGAAGCAGGCGGCCGGCGCGCTTATAAAAGCGA
TAAAAGAGAAACAAGAACTGTTAGTGTGGGCGGTTTGCGGATCAGGGAAAACAGAGATGCTGTTTCCGGGTATAGAGTTT
GCACTGAATCACGGATTGCGGGTCTGTGTCGCGACTCCGCGTACAGATGTCGTGCTTGAACTTCTGCCGAGACTGAAAAA
AGCATTTGAGAATGTTGAAGTTTCAGCTCTGTACGGCAGCAGTGAAGACAAAGGCAGTTTAACTCCGCTAATGATCTCAA
CCGCTCACCAGCTGATGCGATATCGGGACATTTTTGATGTCATGATAATAGATGAAGTGGATGCATTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCGGTTGATAAAGCCAGAAAGAACAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CGCATTAAAAAAGAAGGCTGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGAAAACCTCTCCCGG
AGCCGCGTTTTTTATGGTGCGGCAATTGGAAGAAGAAGCTTGAGAAAGGAAAACTGCCGCACTCAGTAACGGATTGGGTC
CGGCAAAAACTTCAATCACGGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAATATCCGCGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCGGCTTGATCTGCTGGTAACAACTACGATTTTAGAAAGAGGAGTTACCGTATCCAAAGTTCAGACATGTGTCCTCGGC
GCGGAAGCACCTATCTTTACTGAGAGCGCGCTCGTGCAGATCGCAGGCAGAACGGGAAGGCACTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATGACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(329-421)

Type III restriction enzyme, res subunit (ResIII)

(118-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

61.957

99.783

0.618
  comFA Latilactobacillus sakei subsp. sakei 23K

37.955

95.445

0.362