Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   NNG64_RS17405 Genome accession   NZ_CP101610
Coordinates   3491551..3492240 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus siamensis strain WYJ-E14     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3486551..3497240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NNG64_RS17370 (NNG64_17325) - 3486749..3487231 (-) 483 WP_060964147.1 flagellar protein FlgN -
  NNG64_RS17375 (NNG64_17330) flgM 3487246..3487512 (-) 267 WP_016937773.1 flagellar biosynthesis anti-sigma factor FlgM -
  NNG64_RS17380 (NNG64_17335) - 3487582..3488001 (-) 420 WP_047475784.1 TIGR03826 family flagellar region protein -
  NNG64_RS20100 comFC 3488075..3488497 (-) 423 WP_269465406.1 phosphoribosyltransferase family protein Machinery gene
  NNG64_RS17390 (NNG64_17345) - 3488770..3489054 (-) 285 WP_016937770.1 late competence development ComFB family protein -
  NNG64_RS17395 (NNG64_17350) comFA 3489112..3490497 (-) 1386 WP_060964145.1 DEAD/DEAH box helicase Machinery gene
  NNG64_RS17400 (NNG64_17355) - 3490605..3491453 (-) 849 WP_060964144.1 DegV family protein -
  NNG64_RS17405 (NNG64_17360) degU 3491551..3492240 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NNG64_RS17410 (NNG64_17365) degS 3492317..3493480 (-) 1164 WP_256076359.1 two-component sensor histidine kinase DegS Regulator
  NNG64_RS17415 (NNG64_17370) - 3493703..3494350 (+) 648 WP_007614107.1 YigZ family protein -
  NNG64_RS17420 (NNG64_17375) - 3494355..3495593 (+) 1239 WP_060964143.1 LCP family protein -
  NNG64_RS17425 (NNG64_17380) - 3495692..3496768 (-) 1077 WP_060964142.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=710888 NNG64_RS17405 WP_003219701.1 3491551..3492240(-) (degU) [Bacillus siamensis strain WYJ-E14]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=710888 NNG64_RS17405 WP_003219701.1 3491551..3492240(-) (degU) [Bacillus siamensis strain WYJ-E14]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAAGCGGCTCGTATCGTCGAGCATTATCATCCCGATGTCGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACCCATGCTTTAAAAACAGGCGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCGGATACTTTAATTGAGGCAGTGAAAGTAGTAGCCGAAGGCGGTTCGTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGACGTCTTGCGACAAGCGGAGTTTCCGCTCATCCTCAGCATGAGGTTTATCCGGAAATTCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAACGACCGGA
CACAAGCTGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1