Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   MOO21_RS13980 Genome accession   NZ_CP101513
Coordinates   2868981..2869610 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain HH194M     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2863981..2874610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MOO21_RS13965 (MOO21_13965) helD 2864223..2866277 (-) 2055 WP_000420536.1 DNA helicase IV -
  MOO21_RS13970 (MOO21_13970) yccF 2866400..2866846 (+) 447 WP_001261235.1 YccF domain-containing protein -
  MOO21_RS13975 (MOO21_13975) yccS 2866856..2869018 (+) 2163 WP_000875061.1 YccS family putative transporter -
  MOO21_RS13980 (MOO21_13980) sxy/tfoX 2868981..2869610 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  MOO21_RS13985 (MOO21_13985) sulA 2869829..2870338 (+) 510 WP_000288706.1 SOS-induced cell division inhibitor SulA -
  MOO21_RS13990 (MOO21_13990) ompA 2870695..2871747 (+) 1053 WP_001361736.1 porin OmpA -
  MOO21_RS13995 (MOO21_13995) matP 2871823..2872275 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  MOO21_RS14000 (MOO21_14000) ycbZ 2872461..2874221 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=710337 MOO21_RS13980 WP_000839153.1 2868981..2869610(-) (sxy/tfoX) [Escherichia coli strain HH194M]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=710337 MOO21_RS13980 WP_000839153.1 2868981..2869610(-) (sxy/tfoX) [Escherichia coli strain HH194M]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGATGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1