Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY1   Type   Machinery gene
Locus tag   NGC85_RS01735 Genome accession   NZ_CP101115
Coordinates   374253..378434 (+) Length   1393 a.a.
NCBI ID   WP_254804652.1    Uniprot ID   -
Organism   Acinetobacter sp. Z1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 369253..383434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NGC85_RS01705 (NGC85_01705) gmk 369373..369996 (-) 624 WP_005059895.1 guanylate kinase -
  NGC85_RS01710 (NGC85_01710) ispH 370099..371049 (+) 951 WP_254804648.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  NGC85_RS01715 (NGC85_01715) fimU 371189..371638 (+) 450 WP_254804649.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  NGC85_RS01720 (NGC85_01720) pilV 371638..372195 (+) 558 WP_254804650.1 type IV pilus modification protein PilV Machinery gene
  NGC85_RS01725 (NGC85_01725) pilW 372197..373426 (+) 1230 WP_302885511.1 PilW family protein Machinery gene
  NGC85_RS01730 (NGC85_01730) pilX 373429..374241 (+) 813 WP_254804651.1 YjcZ family sporulation protein Machinery gene
  NGC85_RS01735 (NGC85_01735) pilY1 374253..378434 (+) 4182 WP_254804652.1 pilus assembly protein PilY Machinery gene
  NGC85_RS01740 (NGC85_01740) comE 378449..378985 (+) 537 WP_254804653.1 type IV pilin protein Machinery gene
  NGC85_RS01745 (NGC85_01745) pilE 378985..379431 (+) 447 WP_254804654.1 type IV pilin protein Machinery gene
  NGC85_RS01750 (NGC85_01750) - 379661..380131 (+) 471 WP_302885512.1 GspH/FimT family pseudopilin -
  NGC85_RS01755 (NGC85_01755) pilV 380128..380616 (+) 489 WP_254804655.1 type IV pilus modification protein PilV Machinery gene
  NGC85_RS01760 (NGC85_01760) - 380618..381640 (+) 1023 WP_254804656.1 PilW family protein -
  NGC85_RS01765 (NGC85_01765) pilX 381642..382367 (+) 726 WP_254804657.1 pilus assembly PilX N-terminal domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 1393 a.a.        Molecular weight: 148717.97 Da        Isoelectric Point: 7.5225

>NTDB_id=708725 NGC85_RS01735 WP_254804652.1 374253..378434(+) (pilY1) [Acinetobacter sp. Z1]
MQTKLKDFPKNKLWCAICSSSLAMTWLMTASVVQASDLQIYAAPNAGQKTVILMLDTSGSMGVNVNSNSINADYSVCSDR
RTVSSDTGGSGSYTYPRTYCSVAYSATASSNYQRLKNRCFNPGNNGALKCYDRLSRLKDGMFALLDSSDADVTAPNERQI
KLSNTYVGLGNFSADGDNKTGQILVAAKPLGAVGSAQRNLIKSKLTGLSAQSSTPSAHAMAEAASYLLGTTTYSEQTYII
QKERYRKRVQRSNNATSYSTCTNNSSNIDLDNQTQSCRNNGWSSWGTTAPSGIGSATQTDYDSDSTYYYYYYSEPFTHLV
VNADSGTPKSKANDTTDNPDIVMSRTATNVTAQYKSPLPATSSSCDGQGVYFLSDGQPNNSSNDQALTVMQKALDASGST
FQCNIDLPNSVDDYGNDVGSAWNCMGAFAKALFDPTKNPKNRSIKTAFVGFGKEFESNTVTSGTDTDIKNACKISSRAYS
VRGTPPNDKCSPGGGRTVTVPSPTSQETYDGGFGNGGFYQASSPSDVTNSVVDFIRGLGDDSLAPITTGNIIVPYDTLTP
NKLSEYGYLRAFEPDPANNPLTWRGNLKRYRTIMTSGSANLGAFADRNGRLVYQANGNFETNTKDYWNDSTYNDDKLIHL
GGAYSKVPLPFNGQAQLPLTGSPITQYAYTASSKIRNLFTDVESASSSGLTETAIPASVPTAGVGLLQIPAKPTDGSDPY
STSISATASYVLDKFSAAGQAILKDFPIDIKLKLLNYLGYPVNLASTVLPSTLTTSDAPYLSMGGSIHSMPLQLTYSGTL
DASGNLTSAREQSILYGSMEGGLHIVNASTGEEQMVFVPAEILKNSATSKALVVGQVDANAPAHGVDGSWVADSAYNTMA
TTTTSGSTTTTTTKVTARRMNIYGGLRMGGDRDGTNGNSYYGLNVLNPKSPKLLFRINKGTSGFSRLGQTWSKPVLTNVR
YGGQIKRVMIVGGGYDQCYEDPTFTLVTSGNNSTCATKAQAQGNAVYMIDAKTGALLWSATYSAGATDGQQYMKHSIVSR
ISTLDRDADGLTDHLYFGDLGGQVFRADLNNAASTTSSFGVRVVRLANMATNDTTNDNGNDYTGAKAPRFYEPVTVTIHD
EGNDTFILVGLASGNRSTPLDVSPTIGREGMTPATALTGQPVNNVYGVIDRDFSNRNLMTATYASLLSKDKTRADFKKNP
QILATGGNVAAFFFPQVAGSTKDGWYRSLSSQSSSTTAINSVEKADGTFRKKGGLKAFEEPFAITNNLLIPVYDPEGTGV
AQQDPCLPRIIGETDWQKYCLPYGACTNSDGTLNINSEVKSGFQTTTQNCPGNATECNSNVIGGGIRGLAFVPKPETSGS
GSCGKFAMAGNTKGTGEWQCTSRLVQTRWYERR

Nucleotide


Download         Length: 4182 bp        

>NTDB_id=708725 NGC85_RS01735 WP_254804652.1 374253..378434(+) (pilY1) [Acinetobacter sp. Z1]
ATGCAAACAAAATTAAAAGATTTTCCAAAAAATAAACTGTGGTGTGCCATTTGCTCAAGTTCTCTTGCGATGACTTGGTT
GATGACAGCTTCGGTAGTGCAAGCCAGTGACCTACAGATCTATGCTGCCCCGAATGCCGGTCAAAAAACAGTTATTTTGA
TGTTAGATACATCAGGCTCGATGGGAGTTAATGTAAATAGTAATTCTATTAACGCGGATTATTCAGTCTGTTCAGATAGA
AGGACTGTGTCTAGTGATACAGGAGGTAGCGGTTCTTATACATATCCAAGAACTTATTGTTCAGTTGCTTATTCCGCTAC
AGCAAGTTCAAATTATCAACGATTAAAAAATAGATGTTTTAATCCAGGGAATAATGGTGCATTAAAATGTTATGATCGTC
TTTCTCGATTAAAAGATGGTATGTTTGCATTGCTAGATAGTAGTGATGCTGATGTAACAGCTCCAAATGAGCGACAAATT
AAACTCTCAAACACCTATGTAGGTTTGGGGAATTTCTCAGCAGATGGGGATAACAAAACAGGTCAGATTTTGGTTGCAGC
AAAACCATTGGGTGCGGTAGGAAGTGCTCAACGTAATTTAATCAAAAGTAAACTAACTGGGCTTTCTGCACAAAGTAGTA
CACCATCAGCCCATGCGATGGCGGAGGCTGCTTCATATTTATTAGGCACAACCACTTACTCTGAACAAACATATATTATT
CAAAAAGAGCGATATAGAAAAAGAGTTCAACGTTCTAATAATGCAACGTCTTATAGTACTTGTACAAATAATTCTAGTAA
CATTGATTTGGATAATCAAACACAGAGTTGTAGAAATAATGGATGGTCAAGTTGGGGGACAACTGCCCCCAGTGGTATAG
GTTCAGCCACACAGACTGATTACGATAGTGATTCTACTTATTATTATTATTATTATTCAGAGCCGTTTACACATCTTGTA
GTAAATGCTGATAGTGGTACACCTAAGTCAAAAGCAAATGATACTACCGATAATCCAGATATTGTGATGAGTCGTACTGC
TACAAATGTGACAGCACAATATAAATCGCCTTTACCAGCGACCTCTTCCAGTTGTGATGGGCAAGGGGTTTATTTTCTGT
CAGATGGTCAACCTAATAATTCAAGTAATGATCAAGCTTTAACAGTAATGCAAAAAGCTTTGGATGCGTCAGGTAGCACT
TTTCAGTGCAATATTGATTTACCAAATTCTGTAGATGATTATGGTAATGATGTCGGTTCTGCATGGAACTGTATGGGGGC
ATTTGCCAAAGCATTATTTGATCCAACAAAAAATCCAAAAAATCGGTCAATCAAAACGGCATTTGTAGGTTTTGGCAAAG
AATTTGAATCTAATACCGTCACGAGTGGTACAGATACTGATATTAAAAATGCCTGTAAAATTAGTTCTCGAGCTTACTCT
GTCAGAGGCACTCCACCGAATGATAAATGTTCTCCGGGTGGTGGAAGAACAGTTACAGTTCCATCGCCTACATCTCAAGA
AACTTATGATGGTGGTTTCGGTAATGGTGGCTTTTATCAAGCATCCAGCCCATCTGATGTGACCAATAGTGTTGTGGACT
TTATTAGAGGCTTAGGGGATGATAGCCTTGCACCAATTACCACAGGAAATATTATTGTTCCTTATGATACACTTACGCCA
AATAAACTGTCAGAGTATGGTTATTTGCGTGCATTTGAACCAGACCCAGCAAACAATCCTCTCACTTGGCGTGGTAACTT
AAAACGTTATAGAACAATAATGACATCAGGCTCTGCCAACCTTGGAGCATTTGCTGATCGCAACGGAAGATTGGTCTATC
AAGCCAATGGTAATTTTGAGACAAATACCAAAGATTATTGGAATGATTCAACTTATAATGACGATAAACTCATTCATTTA
GGTGGTGCTTATTCAAAAGTACCTTTACCATTCAATGGGCAAGCCCAATTACCTCTCACAGGTAGCCCAATTACTCAATA
TGCTTATACCGCGTCTTCTAAAATTCGTAATCTCTTTACCGATGTTGAAAGTGCAAGTTCATCAGGGTTAACTGAGACTG
CAATTCCAGCATCAGTACCAACAGCAGGTGTAGGGTTATTGCAGATTCCTGCAAAACCAACTGATGGTTCAGACCCGTAT
AGCACGAGTATTTCTGCGACAGCAAGCTATGTGCTGGACAAATTTTCTGCTGCGGGTCAAGCTATTTTAAAAGATTTCCC
AATAGATATAAAACTCAAGCTTTTAAACTATTTAGGCTATCCAGTGAATCTCGCTTCAACTGTATTGCCGAGCACATTGA
CGACATCAGATGCACCTTATTTATCTATGGGCGGCAGCATACACTCGATGCCTTTACAGCTCACATATTCGGGGACTTTG
GATGCCAGTGGTAATCTGACTAGTGCGCGAGAACAGTCAATCCTATATGGTTCAATGGAAGGTGGTCTACATATCGTGAA
TGCTTCAACAGGTGAAGAGCAGATGGTGTTCGTCCCTGCTGAAATCTTGAAAAATAGTGCGACATCTAAAGCTCTAGTTG
TTGGGCAAGTAGATGCAAATGCACCAGCGCATGGTGTCGATGGTTCATGGGTAGCTGATTCAGCATATAACACAATGGCA
ACCACGACCACATCTGGTAGTACAACTACCACAACCACCAAAGTTACAGCCCGAAGAATGAACATTTATGGCGGTTTAAG
AATGGGTGGGGATCGTGATGGAACGAATGGTAACAGCTACTATGGTCTAAATGTCCTCAATCCGAAAAGTCCAAAATTAT
TATTTAGAATCAATAAAGGGACTTCTGGTTTTAGTCGCTTGGGTCAAACATGGTCAAAACCTGTATTGACTAATGTTCGT
TACGGTGGGCAGATTAAACGAGTTATGATCGTGGGTGGTGGATATGATCAGTGTTATGAAGATCCAACATTTACTTTAGT
GACATCAGGAAATAATAGTACTTGTGCAACAAAAGCCCAAGCACAAGGTAATGCTGTTTATATGATTGATGCTAAAACAG
GTGCCCTGCTTTGGTCTGCAACTTATAGTGCTGGTGCAACGGATGGTCAACAATATATGAAACATAGTATTGTGAGTCGT
ATCAGTACTTTAGATCGTGATGCAGATGGATTGACCGATCACCTTTACTTTGGTGATTTGGGTGGGCAGGTATTCCGTGC
TGATCTTAATAATGCAGCGTCAACGACAAGCAGTTTTGGCGTGCGTGTAGTTCGTTTAGCGAATATGGCAACCAATGATA
CAACTAATGATAACGGTAATGATTATACAGGTGCTAAAGCACCACGTTTCTATGAGCCCGTAACAGTAACTATTCATGAT
GAAGGTAATGATACGTTTATCTTGGTTGGCTTGGCTTCTGGTAACCGTAGTACGCCATTAGATGTTTCACCAACAATTGG
TCGTGAAGGGATGACACCTGCAACGGCATTGACAGGCCAGCCCGTGAATAATGTTTATGGTGTTATAGATCGTGACTTCA
GTAATAGAAATTTGATGACAGCTACATATGCAAGCTTACTTTCAAAAGATAAAACACGTGCTGACTTTAAAAAGAATCCG
CAGATTTTAGCGACAGGTGGAAATGTGGCAGCATTCTTCTTCCCTCAAGTCGCCGGATCAACTAAAGACGGTTGGTATCG
TTCATTGTCAAGCCAAAGTAGTTCCACCACAGCAATTAATAGTGTAGAGAAAGCGGATGGAACGTTTAGAAAAAAAGGAG
GCCTAAAAGCATTTGAAGAGCCATTTGCAATCACAAATAATCTATTGATACCTGTATATGATCCTGAAGGTACAGGCGTG
GCACAACAAGACCCATGCTTACCACGTATTATTGGTGAGACCGACTGGCAAAAATATTGTCTACCTTATGGTGCTTGTAC
GAATTCTGATGGGACTCTTAATATAAATTCTGAGGTAAAAAGTGGTTTCCAAACGACAACACAGAACTGCCCAGGAAATG
CAACTGAATGTAATAGCAATGTGATTGGTGGGGGGATACGAGGTCTTGCATTTGTACCAAAACCAGAAACTAGCGGATCA
GGTAGTTGTGGTAAGTTTGCTATGGCTGGTAATACGAAAGGAACGGGTGAATGGCAGTGTACAAGTCGTTTAGTGCAAAC
TCGTTGGTATGAACGTCGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY1 Acinetobacter baumannii D1279779

54.008

92.247

0.498