Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   NGC85_RS01765 Genome accession   NZ_CP101115
Coordinates   381642..382367 (+) Length   241 a.a.
NCBI ID   WP_254804657.1    Uniprot ID   -
Organism   Acinetobacter sp. Z1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 376642..387367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NGC85_RS01740 (NGC85_01740) comE 378449..378985 (+) 537 WP_254804653.1 type IV pilin protein Machinery gene
  NGC85_RS01745 (NGC85_01745) pilE 378985..379431 (+) 447 WP_254804654.1 type IV pilin protein Machinery gene
  NGC85_RS01750 (NGC85_01750) - 379661..380131 (+) 471 WP_302885512.1 GspH/FimT family pseudopilin -
  NGC85_RS01755 (NGC85_01755) pilV 380128..380616 (+) 489 WP_254804655.1 type IV pilus modification protein PilV Machinery gene
  NGC85_RS01760 (NGC85_01760) - 380618..381640 (+) 1023 WP_254804656.1 PilW family protein -
  NGC85_RS01765 (NGC85_01765) pilX 381642..382367 (+) 726 WP_254804657.1 pilus assembly PilX N-terminal domain-containing protein Machinery gene
  NGC85_RS01770 (NGC85_01770) - 382379..386530 (+) 4152 WP_254804658.1 pilus assembly protein -
  NGC85_RS01775 (NGC85_01775) - 386757..387266 (+) 510 WP_277559550.1 type IV pilin protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26492.10 Da        Isoelectric Point: 7.6317

>NTDB_id=708729 NGC85_RS01765 WP_254804657.1 381642..382367(+) (pilX) [Acinetobacter sp. Z1]
MTRYEQGSTLIVVLMIVLLITIVGTLAIRQSISSLKLVSNNQMQTLLLQNADAVLVRFQQPETTQRIAGANGIVGFFKNE
DNWNKELVFCFKGNTPFDLSNASWLYWQNSTKQTQLMATDGGACKTNDISSGRSQVVTQVHIKRAASATQPFADLARGTD
ANNAKTENSMRLQVQVTSVMKGLVSNPSDDLFDENTGCLNKSIQPPSGIQGLIACLREKNILYSTQVAEYRFLSDFEPSG
S

Nucleotide


Download         Length: 726 bp        

>NTDB_id=708729 NGC85_RS01765 WP_254804657.1 381642..382367(+) (pilX) [Acinetobacter sp. Z1]
ATGACCCGATATGAACAAGGCTCGACTCTTATCGTTGTATTAATGATTGTATTGTTAATTACCATCGTTGGGACGCTTGC
CATTCGTCAAAGTATTAGCTCCCTCAAATTGGTGAGTAATAATCAAATGCAAACTTTGTTATTGCAAAATGCCGATGCAG
TATTAGTTCGTTTTCAACAACCCGAAACAACCCAACGTATTGCTGGGGCAAATGGAATTGTCGGTTTCTTTAAAAATGAA
GATAACTGGAATAAAGAGCTCGTTTTTTGTTTTAAAGGAAATACGCCTTTTGATTTGTCCAATGCAAGTTGGTTGTATTG
GCAAAACTCCACAAAACAAACTCAGCTCATGGCGACTGATGGAGGGGCTTGTAAAACCAATGATATTTCCAGTGGTCGAT
CTCAAGTTGTGACGCAAGTTCATATCAAAAGAGCTGCATCTGCTACACAACCTTTTGCTGATTTGGCTCGTGGTACCGAT
GCGAATAATGCGAAAACTGAAAATAGTATGCGGTTACAAGTTCAAGTCACTTCAGTTATGAAGGGCTTAGTTAGCAATCC
AAGTGATGATCTGTTTGATGAAAATACTGGATGTCTGAATAAAAGTATTCAGCCTCCTAGTGGTATACAGGGGTTAATCG
CATGTTTAAGAGAAAAAAATATTTTATACAGTACCCAAGTAGCAGAGTACCGCTTCTTATCTGACTTTGAACCATCTGGT
TCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baylyi ADP1

52.301

99.17

0.519