Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   NGC85_RS01755 Genome accession   NZ_CP101115
Coordinates   380128..380616 (+) Length   162 a.a.
NCBI ID   WP_254804655.1    Uniprot ID   -
Organism   Acinetobacter sp. Z1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 375128..385616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NGC85_RS01740 (NGC85_01740) comE 378449..378985 (+) 537 WP_254804653.1 type IV pilin protein Machinery gene
  NGC85_RS01745 (NGC85_01745) pilE 378985..379431 (+) 447 WP_254804654.1 type IV pilin protein Machinery gene
  NGC85_RS01750 (NGC85_01750) - 379661..380131 (+) 471 WP_302885512.1 GspH/FimT family pseudopilin -
  NGC85_RS01755 (NGC85_01755) pilV 380128..380616 (+) 489 WP_254804655.1 type IV pilus modification protein PilV Machinery gene
  NGC85_RS01760 (NGC85_01760) - 380618..381640 (+) 1023 WP_254804656.1 PilW family protein -
  NGC85_RS01765 (NGC85_01765) pilX 381642..382367 (+) 726 WP_254804657.1 pilus assembly PilX N-terminal domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 17212.86 Da        Isoelectric Point: 6.4446

>NTDB_id=708728 NGC85_RS01755 WP_254804655.1 380128..380616(+) (pilV) [Acinetobacter sp. Z1]
MKHITQKGVGLIEVLVSLVLLAIAVLGFAALQLRAIESSSEASQQVLALTIARDLAERMRANPQAVKNGIYKVGAVTLPT
SEIETTAGNTNSIAAQDLKNAALQANKNGMNLSVANCPTEITRQCIYVAWNDTSLSTNLGIESCIKDGVYLQGAHCLLLE
AY

Nucleotide


Download         Length: 489 bp        

>NTDB_id=708728 NGC85_RS01755 WP_254804655.1 380128..380616(+) (pilV) [Acinetobacter sp. Z1]
ATGAAACATATAACTCAAAAAGGTGTAGGTTTAATAGAAGTACTTGTTTCATTGGTATTATTGGCAATAGCTGTTTTAGG
TTTTGCGGCTTTACAACTGAGAGCAATAGAATCAAGTTCAGAAGCAAGTCAACAGGTCCTAGCATTAACAATTGCAAGAG
ATTTAGCCGAAAGGATGCGAGCAAATCCTCAAGCCGTCAAAAATGGTATTTATAAAGTTGGTGCAGTCACTTTACCGACT
TCAGAAATAGAAACAACGGCAGGCAATACAAATTCTATTGCTGCACAAGATTTAAAAAATGCTGCTTTACAAGCAAATAA
AAATGGAATGAATTTATCAGTCGCAAATTGCCCAACAGAAATAACACGTCAATGTATTTATGTCGCATGGAATGATACTT
CCTTATCAACGAATTTAGGCATCGAATCATGTATTAAAGATGGTGTTTACCTTCAAGGGGCACATTGTCTATTGTTGGAG
GCATATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(6-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baylyi ADP1

44.944

100

0.494
  pilV Acinetobacter baumannii D1279779

37.838

100

0.432