Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   NGC85_RS01745 Genome accession   NZ_CP101115
Coordinates   378985..379431 (+) Length   148 a.a.
NCBI ID   WP_254804654.1    Uniprot ID   -
Organism   Acinetobacter sp. Z1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 373985..384431
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NGC85_RS01735 (NGC85_01735) pilY1 374253..378434 (+) 4182 WP_254804652.1 pilus assembly protein PilY Machinery gene
  NGC85_RS01740 (NGC85_01740) comE 378449..378985 (+) 537 WP_254804653.1 type IV pilin protein Machinery gene
  NGC85_RS01745 (NGC85_01745) pilE 378985..379431 (+) 447 WP_254804654.1 type IV pilin protein Machinery gene
  NGC85_RS01750 (NGC85_01750) - 379661..380131 (+) 471 WP_302885512.1 GspH/FimT family pseudopilin -
  NGC85_RS01755 (NGC85_01755) pilV 380128..380616 (+) 489 WP_254804655.1 type IV pilus modification protein PilV Machinery gene
  NGC85_RS01760 (NGC85_01760) - 380618..381640 (+) 1023 WP_254804656.1 PilW family protein -
  NGC85_RS01765 (NGC85_01765) pilX 381642..382367 (+) 726 WP_254804657.1 pilus assembly PilX N-terminal domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16061.30 Da        Isoelectric Point: 9.5211

>NTDB_id=708727 NGC85_RS01745 WP_254804654.1 378985..379431(+) (pilE) [Acinetobacter sp. Z1]
MYKQYGFTLIELMIVVAIVGVLAAIAYPSYTRYVQKAKRTDVQSEMMNIAQRLQSRKLVNNSYLNAVSTNNTISAIYGSS
TSPQQGTALYTLNFSVLTASTWVLTATPISTGPQTGDGIVCLNDQGQKYWAKAATACALSATSNWDGR

Nucleotide


Download         Length: 447 bp        

>NTDB_id=708727 NGC85_RS01745 WP_254804654.1 378985..379431(+) (pilE) [Acinetobacter sp. Z1]
ATGTACAAGCAGTATGGTTTTACGCTGATTGAATTAATGATCGTAGTTGCAATTGTTGGTGTGTTGGCTGCTATTGCTTA
TCCTAGCTATACTCGATATGTACAAAAAGCAAAACGTACAGATGTTCAGTCTGAAATGATGAATATCGCTCAGAGATTGC
AGTCTCGGAAATTGGTAAATAATAGTTATCTAAATGCTGTATCTACGAATAATACGATTAGCGCAATTTATGGTTCATCA
ACCAGCCCACAGCAAGGAACAGCATTATATACTCTTAATTTCAGTGTATTGACTGCTTCGACTTGGGTTTTAACAGCGAC
ACCTATTTCTACCGGCCCTCAAACAGGCGATGGGATTGTTTGTTTAAATGATCAAGGTCAAAAATATTGGGCGAAAGCAG
CAACAGCTTGTGCTCTAAGTGCAACTTCGAACTGGGATGGTCGTTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(28-121)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

67.143

94.595

0.635
  comF Acinetobacter baylyi ADP1

55.034

100

0.554