Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   NGC85_RS01715 Genome accession   NZ_CP101115
Coordinates   371189..371638 (+) Length   149 a.a.
NCBI ID   WP_254804649.1    Uniprot ID   -
Organism   Acinetobacter sp. Z1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 366189..376638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NGC85_RS01695 (NGC85_01695) - 366708..368816 (-) 2109 WP_254804647.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  NGC85_RS01700 (NGC85_01700) rpoZ 369025..369303 (-) 279 WP_005052184.1 DNA-directed RNA polymerase subunit omega -
  NGC85_RS01705 (NGC85_01705) gmk 369373..369996 (-) 624 WP_005059895.1 guanylate kinase -
  NGC85_RS01710 (NGC85_01710) ispH 370099..371049 (+) 951 WP_254804648.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  NGC85_RS01715 (NGC85_01715) fimU 371189..371638 (+) 450 WP_254804649.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  NGC85_RS01720 (NGC85_01720) pilV 371638..372195 (+) 558 WP_254804650.1 type IV pilus modification protein PilV Machinery gene
  NGC85_RS01725 (NGC85_01725) pilW 372197..373426 (+) 1230 WP_302885511.1 PilW family protein Machinery gene
  NGC85_RS01730 (NGC85_01730) pilX 373429..374241 (+) 813 WP_254804651.1 YjcZ family sporulation protein Machinery gene

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16083.55 Da        Isoelectric Point: 10.9635

>NTDB_id=708721 NGC85_RS01715 WP_254804649.1 371189..371638(+) (fimU) [Acinetobacter sp. Z1]
MGKSRGFTLIELMVTIAIMAIIASMAAPSFSNMLESRRYERNARELLQVLSQAKSQAILSRANANANLVSTSSNTTTTFN
WAVVNSYTTLSISPAVTASTFVFDRNGIPNITADTTLTLCNSKVKTRKTVIVTRLGASILRPDTTVSTC

Nucleotide


Download         Length: 450 bp        

>NTDB_id=708721 NGC85_RS01715 WP_254804649.1 371189..371638(+) (fimU) [Acinetobacter sp. Z1]
ATGGGGAAAAGTCGAGGATTCACCTTAATTGAATTGATGGTGACAATAGCAATAATGGCTATTATTGCGTCGATGGCAGC
ACCATCCTTTAGTAATATGTTGGAAAGTCGTCGTTATGAGCGAAATGCAAGGGAATTGTTGCAAGTTCTCTCTCAAGCAA
AAAGTCAGGCTATTTTATCTCGGGCAAATGCAAATGCAAATCTTGTATCAACTAGCAGCAATACCACAACGACTTTTAAC
TGGGCAGTGGTGAATAGCTATACGACTTTGTCGATATCTCCTGCTGTCACTGCATCTACATTTGTATTTGATCGGAATGG
AATTCCAAATATTACAGCAGATACAACGCTTACATTATGTAATTCAAAAGTGAAAACACGGAAAACCGTGATTGTAACGA
GGTTAGGGGCGAGTATTTTGAGACCTGATACAACAGTGAGTACATGTTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

49.333

100

0.497