Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   NGC85_RS01725 Genome accession   NZ_CP101115
Coordinates   372197..373426 (+) Length   409 a.a.
NCBI ID   WP_302885511.1    Uniprot ID   -
Organism   Acinetobacter sp. Z1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 367197..378426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NGC85_RS01700 (NGC85_01700) rpoZ 369025..369303 (-) 279 WP_005052184.1 DNA-directed RNA polymerase subunit omega -
  NGC85_RS01705 (NGC85_01705) gmk 369373..369996 (-) 624 WP_005059895.1 guanylate kinase -
  NGC85_RS01710 (NGC85_01710) ispH 370099..371049 (+) 951 WP_254804648.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  NGC85_RS01715 (NGC85_01715) fimU 371189..371638 (+) 450 WP_254804649.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  NGC85_RS01720 (NGC85_01720) pilV 371638..372195 (+) 558 WP_254804650.1 type IV pilus modification protein PilV Machinery gene
  NGC85_RS01725 (NGC85_01725) pilW 372197..373426 (+) 1230 WP_302885511.1 PilW family protein Machinery gene
  NGC85_RS01730 (NGC85_01730) pilX 373429..374241 (+) 813 WP_254804651.1 YjcZ family sporulation protein Machinery gene

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 43249.05 Da        Isoelectric Point: 8.8955

>NTDB_id=708723 NGC85_RS01725 WP_302885511.1 372197..373426(+) (pilW) [Acinetobacter sp. Z1]
MKKIFINPHSQSTASQLLTSQLPLQPRVIRLHRASGFTLIELMVALVLGLIVTAAAVQLFVGGILSSRLQQSTAEIQDSG
LFGLDYVVKDIRLANQGNITNLELNDRTPYGGIVLTGAVAPPPVTTPPTPVIPTNFVPKVGASSYIDDALLSRGQGDPVS
STNNFWKGLTNVTLQDSATPPATIASPVSDQLTIQFVAPANMPNCEGVNVLAGDLVVQRYFLRPDANGAATDYALACDAN
TPAATASAVNARPDSTTEMLGLGDAGQIVIPRVDHFHVLFGVKTTTTTKVTDTSRVISTATSPPNPNTTITDRFAYYTIP
QYRTAAAAARTGSTSTTSGTVTTDVKITARIVSVQTSILVRSANNAQNTAINPSQSHIMLDQIATPTSTARFQRRAYSTT
VALRNAMGE

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=708723 NGC85_RS01725 WP_302885511.1 372197..373426(+) (pilW) [Acinetobacter sp. Z1]
ATGAAGAAAATTTTTATAAATCCTCATAGCCAAAGTACAGCTTCTCAGCTTCTTACGAGCCAATTGCCACTTCAACCACG
TGTTATTCGATTGCACCGTGCTTCTGGATTTACGCTGATTGAATTGATGGTTGCACTTGTTTTGGGGCTTATCGTAACCG
CAGCAGCAGTTCAGTTGTTTGTTGGTGGGATACTCTCAAGCCGTTTACAACAGTCGACGGCTGAAATTCAGGACAGCGGA
TTGTTTGGATTGGATTATGTAGTGAAAGATATTCGCCTTGCCAATCAGGGGAATATCACAAATCTCGAGCTAAATGATCG
TACGCCGTATGGTGGAATTGTATTGACAGGTGCGGTTGCACCACCACCTGTCACGACGCCACCAACGCCTGTTATTCCAA
CTAATTTTGTACCTAAAGTTGGAGCATCGAGTTATATCGATGATGCTTTGTTAAGTCGAGGGCAGGGTGATCCAGTATCA
AGTACTAACAATTTTTGGAAAGGATTAACCAACGTCACATTGCAAGATTCGGCAACCCCTCCTGCTACAATTGCGAGTCC
TGTAAGTGACCAGTTGACAATTCAGTTTGTTGCGCCTGCAAATATGCCAAATTGTGAAGGTGTAAACGTTTTAGCAGGTG
ATTTGGTTGTACAGCGTTATTTCTTACGACCTGATGCCAATGGCGCAGCTACAGATTATGCTCTGGCATGTGATGCAAAT
ACACCTGCAGCGACAGCAAGTGCGGTTAATGCTCGACCTGATAGTACTACTGAGATGTTAGGTTTAGGTGATGCAGGGCA
AATCGTAATTCCACGAGTCGATCATTTCCATGTGTTATTTGGTGTGAAAACCACCACTACCACCAAGGTAACGGATACAT
CTAGAGTTATAAGCACGGCTACATCTCCCCCAAACCCCAATACCACCATCACTGATCGGTTTGCATATTATACGATTCCG
CAGTATAGAACTGCTGCTGCTGCTGCTCGAACTGGCTCAACCAGTACTACGTCAGGCACAGTGACAACGGATGTAAAGAT
TACGGCTCGTATAGTGTCAGTACAGACTTCTATCTTGGTTCGTTCGGCAAATAATGCGCAAAATACCGCAATTAACCCTT
CACAATCACACATTATGTTAGATCAAATAGCGACACCAACCAGTACAGCCCGTTTTCAGAGACGTGCTTACAGTACGACA
GTTGCTTTGCGTAATGCGATGGGAGAATGA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(220-405)

Prokaryotic N-terminal methylation motif (N_methyl)

(32-56)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

54.737

92.91

0.509