Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   K6J63_RS00520 Genome accession   NZ_AP018765
Coordinates   92913..93632 (-) Length   239 a.a.
NCBI ID   WP_011272300.1    Uniprot ID   Q4QLW9
Organism   Haemophilus influenzae strain CHBN-II-2 isolate 12H49     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 87913..98632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J63_RS00500 (CHBNII2_01010) nrdR 88038..88487 (-) 450 WP_005648026.1 transcriptional regulator NrdR -
  K6J63_RS00505 (CHBNII2_01020) recC 88542..91907 (-) 3366 WP_105892709.1 exodeoxyribonuclease V subunit gamma -
  K6J63_RS00510 (CHBNII2_01030) comQ 91953..92240 (-) 288 WP_021034778.1 DUF5374 domain-containing protein Machinery gene
  K6J63_RS00515 (CHBNII2_01040) comP 92233..92916 (-) 684 WP_011272301.1 DUF2572 family protein Machinery gene
  K6J63_RS00520 (CHBNII2_01050) comO 92913..93632 (-) 720 WP_011272300.1 type II secretion system protein J Machinery gene
  K6J63_RS00525 (CHBNII2_01060) comN 93632..94144 (-) 513 WP_011272299.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  K6J63_RS00530 (CHBNII2_01070) suhB 94344..95156 (+) 813 WP_011272298.1 inositol-1-monophosphatase -
  K6J63_RS00535 (CHBNII2_01080) nrfE 95265..97172 (+) 1908 WP_110417938.1 heme lyase NrfEFG subunit NrfE -
  K6J63_RS00540 (CHBNII2_01090) - 97172..97702 (+) 531 WP_005688388.1 DsbE family thiol:disulfide interchange protein -

Sequence

Protein


Download         Length: 239 a.a.        Molecular weight: 26922.29 Da        Isoelectric Point: 9.3761

>NTDB_id=70745 K6J63_RS00520 WP_011272300.1 92913..93632(-) (comO) [Haemophilus influenzae strain CHBN-II-2 isolate 12H49]
MMKTLLKGQTLLALMISLALSSLLLLSISHFYVQIQTQNQQMLLHLKLQAELQRILQLIGKDLRRLGFRALNAKLTESNL
FLFELDEQGTAIFISQEDNAPPNSCVLFFYDLNKNGCIGKGSPKTCMKNGKNTSKSSTEELFGYKVSNKMIKTKLTYQSV
IPTNCTAETCKRAFQQTACNAGGGWADLLDNNEYEITRLQFNWLIEGKGLEIKLKGNLKQTPNISYETSLVVALWNQKQ

Nucleotide


Download         Length: 720 bp        

>NTDB_id=70745 K6J63_RS00520 WP_011272300.1 92913..93632(-) (comO) [Haemophilus influenzae strain CHBN-II-2 isolate 12H49]
ATGATGAAAACATTATTAAAAGGGCAAACCCTATTAGCACTGATGATTTCACTGGCTTTGTCTTCTTTATTGCTGCTAAG
CATTTCGCATTTTTATGTGCAAATACAAACACAAAACCAACAAATGTTATTACATTTAAAATTACAAGCTGAATTACAAC
GAATATTACAGTTAATAGGCAAAGATCTTCGCCGATTAGGATTTCGAGCATTAAATGCAAAACTGACGGAAAGCAATTTA
TTTTTATTTGAATTAGATGAACAAGGCACAGCCATTTTTATTAGCCAAGAAGATAATGCGCCACCTAATAGCTGCGTGTT
GTTCTTTTATGATTTAAATAAAAATGGGTGTATTGGTAAAGGTTCGCCGAAAACCTGTATGAAAAATGGGAAAAATACAT
CTAAAAGTAGTACTGAAGAATTATTTGGCTATAAAGTGAGTAACAAAATGATAAAAACCAAACTGACTTATCAAAGTGTT
ATTCCTACTAATTGCACGGCAGAAACGTGTAAACGTGCTTTTCAACAAACCGCTTGCAACGCTGGGGGAGGTTGGGCAGA
TTTATTAGATAACAACGAATATGAAATTACTAGGCTACAATTTAATTGGTTAATTGAAGGCAAAGGATTAGAAATCAAGT
TAAAAGGAAATTTAAAACAAACCCCAAATATCAGTTATGAAACCTCCCTTGTCGTTGCTCTTTGGAATCAAAAACAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q4QLW9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

97.059

99.582

0.967

Multiple sequence alignment