Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   H7677_RS00740 Genome accession   NZ_AP023391
Coordinates   116772..117179 (+) Length   135 a.a.
NCBI ID   WP_184493709.1    Uniprot ID   -
Organism   Streptococcus suis strain DAT299     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 111772..122179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7677_RS00715 (DAT299_01060) - 113173..113538 (+) 366 WP_002936568.1 DUF1033 family protein -
  H7677_RS00720 (DAT299_01070) - 113573..114523 (-) 951 WP_184493703.1 S66 peptidase family protein -
  H7677_RS00725 (DAT299_01080) comGA 114609..115559 (+) 951 WP_184493705.1 competence type IV pilus ATPase ComGA Machinery gene
  H7677_RS00730 (DAT299_01090) comGB 115471..116508 (+) 1038 WP_269473649.1 competence type IV pilus assembly protein ComGB Machinery gene
  H7677_RS00735 (DAT299_01100) comGC 116510..116791 (+) 282 WP_184493707.1 competence type IV pilus major pilin ComGC Machinery gene
  H7677_RS00740 (DAT299_01110) comGD 116772..117179 (+) 408 WP_184493709.1 competence type IV pilus minor pilin ComGD Machinery gene
  H7677_RS00745 (DAT299_01120) comGE 117151..117444 (+) 294 WP_011921722.1 competence type IV pilus minor pilin ComGE Machinery gene
  H7677_RS00750 (DAT299_01130) comGF/cglF 117431..117865 (+) 435 WP_079268055.1 competence type IV pilus minor pilin ComGF Machinery gene
  H7677_RS00755 (DAT299_01140) comGG 117843..118370 (+) 528 WP_184493711.1 competence type IV pilus minor pilin ComGG -
  H7677_RS00760 (DAT299_01150) comGH 118427..119380 (+) 954 WP_184493713.1 class I SAM-dependent methyltransferase Machinery gene
  H7677_RS00765 (DAT299_01160) - 119430..120617 (+) 1188 WP_184493715.1 acetate kinase -
  H7677_RS00770 (DAT299_01170) - 120932..121483 (+) 552 WP_184493717.1 folate family ECF transporter S component -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 15337.57 Da        Isoelectric Point: 9.8864

>NTDB_id=70614 H7677_RS00740 WP_184493709.1 116772..117179(+) (comGD) [Streptococcus suis strain DAT299]
MLRRKSKAFTLFESLLTLFVISFLAVSLSGTVQTVFRSVQEEIFLWEFEAIYKDSQKLAASSHQKVNLAIGGQEVTNGYQ
AVQLPRNVEVFEGKTITLEEDGGNSSLTKIRFRLSRKTVTYQLYIGSGRYKKTEE

Nucleotide


Download         Length: 408 bp        

>NTDB_id=70614 H7677_RS00740 WP_184493709.1 116772..117179(+) (comGD) [Streptococcus suis strain DAT299]
ATGCTAAGGCGAAAAAGTAAGGCCTTCACCCTGTTTGAAAGCCTGCTGACCTTGTTTGTTATCAGTTTTTTAGCTGTTTC
CTTATCAGGAACAGTACAAACGGTCTTTCGGTCTGTTCAGGAAGAAATTTTTCTCTGGGAATTTGAGGCCATCTATAAAG
ACAGTCAGAAATTGGCAGCCAGTTCCCACCAAAAAGTGAACCTTGCTATCGGTGGACAGGAGGTTACAAATGGTTATCAG
GCTGTACAATTACCCAGAAATGTAGAAGTGTTTGAAGGGAAGACCATCACACTTGAAGAAGATGGTGGAAATTCTTCTCT
GACCAAGATTCGTTTTCGGCTTAGTCGAAAGACAGTCACGTATCAATTATATATAGGGAGTGGTCGCTATAAGAAAACAG
AAGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Streptococcus mutans UA159

46.512

95.556

0.444
  comGD Streptococcus mutans UA140

46.512

95.556

0.444
  comGD Streptococcus gordonii str. Challis substr. CH1

47.244

94.074

0.444
  comGD/cglD Streptococcus pneumoniae TIGR4

44.961

95.556

0.43
  comGD/cglD Streptococcus pneumoniae Rx1

44.961

95.556

0.43
  comGD/cglD Streptococcus pneumoniae D39

44.961

95.556

0.43
  comGD/cglD Streptococcus pneumoniae R6

44.961

95.556

0.43
  comGD/cglD Streptococcus mitis NCTC 12261

44.186

95.556

0.422
  comGD/cglD Streptococcus mitis SK321

44.186

95.556

0.422

Multiple sequence alignment