Detailed information NTG0070601

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: H7677_RS00330
• Genome accession: NZ_AP023391
• Coordinates: 55253..56254 (+)
• Length: 333 a.a.
• NCBI ID: WP_024377694.1
• Uniprot ID: -
• Organism: Streptococcus suis strain DAT299
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 50253..61254

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H7677_RS00300	-	50303..50881 (+)	579	WP_184493685.1	CPBP family intramembrane glutamic endopeptidase	-
H7677_RS00305 (DAT299_00410)	-	50896..51324 (+)	429	WP_184493687.1	Msa family membrane protein	-
H7677_RS00310 (DAT299_00420)	-	51317..52189 (+)	873	WP_029184817.1	ABC transporter ATP-binding protein	-
H7677_RS00315 (DAT299_00430)	-	52195..52965 (+)	771	WP_184493689.1	hypothetical protein	-
H7677_RS00320 (DAT299_00440)	-	52968..54683 (+)	1716	WP_184493691.1	ABC transporter ATP-binding protein	-
H7677_RS00325 (DAT299_00450)	-	54785..54958 (+)	174	WP_014637276.1	hypothetical protein	-
H7677_RS00330 (DAT299_00460)	ruvB	55253..56254 (+)	1002	WP_024377694.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
H7677_RS00335 (DAT299_00470)	-	56322..56957 (+)	636	WP_172060542.1	HAD-IA family hydrolase	-
H7677_RS00340 (DAT299_00480)	comR	57204..58103 (+)	900	WP_172060541.1	helix-turn-helix domain-containing protein	Regulator
H7677_RS00345 (DAT299_00490)	-	58311..59525 (+)	1215	WP_184493693.1	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	-
H7677_RS00350 (DAT299_00500)	-	59722..61245 (+)	1524	WP_105159094.1	quinol oxidase	-

Sequence

Protein

• Length: 333 a.a.
• Molecular weight: 37627.15 Da
• Isoelectric Point: 4.4673

>NTDB_id=70601 H7677_RS00330 WP_024377694.1 55253..56254(+) (ruvB) [Streptococcus suis strain DAT299]
MTNRILDMEQMQDEEYVERTLRPQKLNEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANELGVN
IKQTSGPVIEKAGDLVALLNDLEPGDVLFIDEIHRMPMAVEEILYSAMEDFYIDIMIGAGEASRSVHLELPPFTLIGATT
RAGMLSNPLRARFGITGHMEYYELADLTEIVERTADIFDMEITHEAAIELARRSRGTPRIANRLLKRVRDFAQIMGDGLI
DDTITDKALTMLDVDREGLDYVDQKILRTMIEMYGGGPVGLNTLSVNIAEERETVEDMYEPYLIQQGFLMRTRTGRVATA
KAYEHLGYPYTEK

Nucleotide

• Length: 1002 bp

>NTDB_id=70601 H7677_RS00330 WP_024377694.1 55253..56254(+) (ruvB) [Streptococcus suis strain DAT299]
ATGACAAATCGAATTTTAGATATGGAACAAATGCAGGACGAGGAGTATGTTGAGCGTACCCTGCGTCCACAGAAATTAAA
TGAGTACATCGGTCAGGACAAGGTTAAGGACCAGCTGAAAATCTTTATCGAGGCAGCCAAGCTCCGTGATGAAGCCTTGG
ACCATACCCTTCTGTTTGGACCTCCAGGTTTGGGGAAGACCACCATGGCTTTTGTCATTGCCAACGAACTAGGCGTCAAT
ATCAAGCAGACCAGTGGTCCTGTTATTGAAAAAGCAGGTGACTTGGTGGCCCTTCTCAACGACTTGGAGCCTGGCGACGT
CCTCTTTATCGATGAAATCCACCGTATGCCCATGGCGGTCGAGGAAATTCTCTACTCTGCTATGGAGGATTTCTACATCG
ACATCATGATTGGGGCTGGGGAAGCCAGTCGCTCCGTGCATTTGGAGTTGCCACCTTTTACCCTGATTGGAGCGACCACT
CGTGCGGGTATGCTGTCCAATCCCCTGCGGGCTCGTTTTGGTATTACCGGTCATATGGAGTATTATGAACTGGCTGATTT
GACGGAGATTGTCGAGCGGACAGCGGACATCTTTGACATGGAGATTACTCATGAAGCAGCGATCGAGCTGGCTCGTCGTT
CCCGTGGGACCCCTCGTATCGCCAACCGCCTGCTCAAGCGGGTGAGGGATTTCGCACAGATTATGGGCGATGGTCTGATT
GATGATACCATTACGGACAAGGCCTTGACTATGCTGGATGTGGACCGCGAGGGGCTGGACTACGTGGACCAAAAGATTCT
CCGTACCATGATTGAGATGTACGGTGGCGGTCCCGTCGGCCTCAACACCCTGTCGGTCAATATTGCCGAGGAGCGTGAGA
CGGTGGAGGACATGTACGAACCTTACCTGATTCAGCAGGGCTTCCTCATGCGGACGCGGACAGGGCGGGTTGCGACAGCC
AAGGCTTACGAGCACTTGGGTTATCCCTATACGGAAAAATAA

Domains

Predicted by InterProScan.

• RuvB C-terminal winged helix domain (WHD_RuvB) (257-326)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (21-179)

• RuvB AAA lid domain (AAA_lid_4) (182-255)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae TIGR4	90.332	99.399	0.898
ruvB	Streptococcus pneumoniae R6	90.03	99.399	0.895
ruvB	Streptococcus pneumoniae D39	90.03	99.399	0.895
ruvB	Bacillus subtilis subsp. subtilis str. 168	58.589	97.898	0.574
ruvB	Helicobacter pylori 26695	51.064	98.799	0.505
ruvB	Synechocystis sp. PCC 6803	50.479	93.994	0.474