Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   FGCSD_RS09505 Genome accession   NZ_AP018726
Coordinates   1918799..1919290 (-) Length   163 a.a.
NCBI ID   WP_002993238.1    Uniprot ID   A0A9X5LZM9
Organism   Streptococcus dysgalactiae strain Kdys0611     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1913799..1924290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGCSD_RS09490 (FGCSD_1847) - 1916571..1917515 (+) 945 WP_129556234.1 magnesium transporter CorA family protein -
  FGCSD_RS09495 (FGCSD_1848) - 1917648..1918307 (+) 660 WP_129556235.1 DUF1129 domain-containing protein -
  FGCSD_RS09500 (FGCSD_1849) rpsR 1918441..1918680 (-) 240 WP_002983142.1 30S ribosomal protein S18 -
  FGCSD_RS09505 (FGCSD_1850) ssbA 1918799..1919290 (-) 492 WP_002993238.1 single-stranded DNA-binding protein Machinery gene
  FGCSD_RS09510 (FGCSD_1851) rpsF 1919312..1919602 (-) 291 WP_002983117.1 30S ribosomal protein S6 -
  FGCSD_RS11510 (FGCSD_1852) - 1920560..1920853 (-) 294 WP_003052683.1 hypothetical protein -
  FGCSD_RS09520 (FGCSD_1853) mutY 1921020..1922186 (+) 1167 WP_129556236.1 A/G-specific adenine glycosylase -
  FGCSD_RS09525 (FGCSD_1854) trxA 1922236..1922550 (-) 315 WP_003052691.1 thioredoxin -
  FGCSD_RS09530 (FGCSD_1855) - 1922777..1924096 (+) 1320 WP_129556237.1 FAD-containing oxidoreductase -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17995.78 Da        Isoelectric Point: 4.8894

>NTDB_id=70602 FGCSD_RS09505 WP_002993238.1 1918799..1919290(-) (ssbA) [Streptococcus dysgalactiae strain Kdys0611]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNTSSSNSYSAPAQQTPNFGRDDSPFGNSNPMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=70602 FGCSD_RS09505 WP_002993238.1 1918799..1919290(-) (ssbA) [Streptococcus dysgalactiae strain Kdys0611]
ATGATTAATAATGTAGTACTAGTTGGTCGCATGACCAAGGATGCAGAACTTCGTTACACACCAAGTCAAGTAGCTGTGGC
TACCTTCACACTTGCTGTTAACCGTACCTTTAAAAGCCAAAATGGTGAGCGCGAGGCAGATTTCATTAACTGTGTGATCT
GGCGCCAACCTGCTGAAAATTTAGCAAACTGGGCTAAAAAAGGTGCCTTGATCGGAATTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGCCGTGC
TACACGTGAAGGTGGCTCAACTGGCTCATTTAATGGTGGATTTAACAATAACACTTCATCATCGAACAGTTACTCAGCGC
CTGCACAACAAACACCTAACTTTGGAAGAGATGATAGCCCATTTGGCAATTCAAACCCGATGGATATCTCAGATGACGAT
CTTCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.621

100

0.626
  ssb Latilactobacillus sakei subsp. sakei 23K

59.302

100

0.626
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

65.031

0.368

Multiple sequence alignment