Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NLY76_RS04750 Genome accession   NZ_CP100430
Coordinates   987905..988747 (+) Length   280 a.a.
NCBI ID   WP_044769794.1    Uniprot ID   -
Organism   Streptococcus suis strain LSS42     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 982905..993747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLY76_RS04715 (NLY76_04715) ylqF 982907..983758 (+) 852 WP_044769789.1 ribosome biogenesis GTPase YlqF -
  NLY76_RS04720 (NLY76_04720) - 983745..984518 (+) 774 WP_015646815.1 ribonuclease HII -
  NLY76_RS04725 (NLY76_04725) - 984521..985531 (+) 1011 WP_044769790.1 YdcF family protein -
  NLY76_RS04730 (NLY76_04730) - 985564..986214 (-) 651 WP_044769791.1 hemolysin III family protein -
  NLY76_RS04735 (NLY76_04735) - 986204..986755 (-) 552 WP_024415408.1 DUF1836 domain-containing protein -
  NLY76_RS04740 (NLY76_04740) - 986852..987163 (-) 312 WP_024395839.1 rhodanese-like domain-containing protein -
  NLY76_RS04745 (NLY76_04745) - 987291..987848 (+) 558 WP_044769792.1 sugar O-acetyltransferase -
  NLY76_RS04750 (NLY76_04750) dprA 987905..988747 (+) 843 WP_044769794.1 DNA-processing protein DprA Machinery gene
  NLY76_RS04755 (NLY76_04755) topA 988840..990933 (+) 2094 WP_044769796.1 type I DNA topoisomerase -
  NLY76_RS04760 (NLY76_04760) rplJ 991510..992004 (+) 495 WP_002936486.1 50S ribosomal protein L10 -
  NLY76_RS04765 (NLY76_04765) rplL 992070..992435 (+) 366 WP_002936483.1 50S ribosomal protein L7/L12 -
  NLY76_RS04770 (NLY76_04770) - 992695..992868 (+) 174 WP_044769819.1 hypothetical protein -
  NLY76_RS04775 (NLY76_04775) - 992865..993689 (+) 825 WP_009909851.1 replication initiator protein A -

Sequence

Protein


Download         Length: 280 a.a.        Molecular weight: 31289.17 Da        Isoelectric Point: 8.4451

>NTDB_id=705215 NLY76_RS04750 WP_044769794.1 987905..988747(+) (dprA) [Streptococcus suis strain LSS42]
MNNFELFKWKKAGLTNLNVNKVLAYQEKHGKKLTLRNVAVVSECKNPVLFMENYKNLDTKACREEFNKYPSFSILDDIYP
LALKQIYNPPVLLFYQGDLELLEKSKLAVVGTRNASKNGIQSVQKIIKELSNRFVIVSGLARGIDTAAHIASLKNGGQTI
AVIGTGLDKIYPKENRELQTYIGKHHLVLTEYEPGADPLKYHFPERNRIIAGLVEGLVVCEAKMRSGSLITCERALEEGR
EVYAIPGSIMDGKSDGCHHLIQEGAKCVTSGLDIISEYQF

Nucleotide


Download         Length: 843 bp        

>NTDB_id=705215 NLY76_RS04750 WP_044769794.1 987905..988747(+) (dprA) [Streptococcus suis strain LSS42]
ATGAATAATTTTGAATTGTTTAAATGGAAAAAAGCAGGTTTGACCAATCTTAATGTGAATAAAGTTTTGGCCTATCAAGA
AAAACACGGTAAAAAATTGACCTTGCGAAATGTCGCTGTAGTGTCTGAATGTAAAAATCCAGTGCTATTTATGGAAAATT
ATAAGAATCTAGATACAAAAGCCTGTCGCGAGGAATTTAATAAGTATCCATCATTTTCAATTTTAGATGACATCTATCCT
TTGGCGCTCAAACAGATTTACAATCCACCTGTACTTTTGTTTTATCAAGGGGATTTAGAATTGCTAGAAAAATCAAAGCT
GGCAGTTGTTGGTACTCGAAATGCCAGCAAAAATGGTATCCAATCTGTTCAGAAAATTATCAAAGAATTGAGCAATCGTT
TTGTCATTGTTAGTGGTTTGGCAAGAGGAATTGATACAGCTGCTCACATCGCCAGTTTGAAAAATGGAGGCCAAACCATT
GCTGTAATTGGAACAGGTTTGGATAAGATTTATCCCAAAGAAAACAGAGAATTACAGACCTACATAGGTAAACACCATTT
AGTTTTGACAGAATATGAACCAGGTGCAGACCCTCTCAAATATCATTTTCCAGAACGCAATCGCATTATAGCTGGTTTGG
TGGAAGGATTGGTGGTCTGTGAGGCAAAAATGCGGTCGGGTAGCTTGATTACCTGCGAACGTGCCTTGGAAGAAGGAAGA
GAAGTCTATGCTATTCCAGGTTCCATTATGGACGGAAAATCAGATGGTTGTCATCATCTGATTCAAGAGGGTGCAAAGTG
CGTTACATCAGGCTTGGACATCATTTCTGAGTATCAATTTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-269)

DNA processing protein A sterile alpha motif domain (SAM_DprA)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Streptococcus mutans UA159

69.643

100

0.696
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

63.214

100

0.632
  dprA/cilB/dalA Streptococcus pneumoniae D39

63.214

100

0.632
  dprA/cilB/dalA Streptococcus pneumoniae R6

63.214

100

0.632
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

63.214

100

0.632
  dprA/cilB/dalA Streptococcus mitis SK321

63.214

100

0.632
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

63.214

100

0.632
  dprA Lactococcus lactis subsp. cremoris KW2

60.357

100

0.604
  dprA Legionella pneumophila strain ERS1305867

42.105

88.214

0.371
  dprA Bacillus subtilis subsp. subtilis str. 168

51.244

71.786

0.368