Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   L4174_RS11885 Genome accession   NZ_CP100425
Coordinates   2556454..2556738 (-) Length   94 a.a.
NCBI ID   WP_371929344.1    Uniprot ID   -
Organism   Photobacterium sp. CCB-ST2H9     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2551454..2561738
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L4174_RS11860 (L4174_011860) - 2551929..2553143 (+) 1215 WP_248141086.1 pyridoxal phosphate-dependent aminotransferase -
  L4174_RS11865 (L4174_011865) yfbR 2553246..2553830 (+) 585 WP_248141087.1 5'-deoxynucleotidase -
  L4174_RS11870 (L4174_011870) - 2553830..2555197 (+) 1368 WP_248141088.1 anti-phage deoxyguanosine triphosphatase -
  L4174_RS11875 (L4174_011875) - 2555194..2555808 (-) 615 WP_248141089.1 tRNA-uridine aminocarboxypropyltransferase -
  L4174_RS11880 (L4174_011880) rrtA 2555822..2556394 (+) 573 WP_248141090.1 rhombosortase -
  L4174_RS11885 (L4174_011885) comEA 2556454..2556738 (-) 285 WP_371929344.1 ComEA family DNA-binding protein Machinery gene
  L4174_RS11890 (L4174_011890) ppiD 2556871..2558763 (-) 1893 WP_248141092.1 peptidylprolyl isomerase -
  L4174_RS11895 (L4174_011895) hupB 2558960..2559232 (-) 273 WP_248141093.1 nucleoid-associated protein HU-beta -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10094.40 Da        Isoelectric Point: 4.6135

>NTDB_id=705126 L4174_RS11885 WP_371929344.1 2556454..2556738(-) (comEA) [Photobacterium sp. CCB-ST2H9]
MKNSIALLMLASSLVISGTADATDTHEGIEIVVNINTANAEELDKLLLGVGPDKARSIIEYRDQHGEFSTADDLSKVKGI
GASTVEKNRDRIQL

Nucleotide


Download         Length: 285 bp        

>NTDB_id=705126 L4174_RS11885 WP_371929344.1 2556454..2556738(-) (comEA) [Photobacterium sp. CCB-ST2H9]
ATGAAGAATTCAATTGCGCTACTGATGTTGGCTTCAAGCCTGGTGATATCTGGCACGGCTGATGCCACGGATACGCATGA
AGGGATTGAAATCGTTGTGAATATCAATACTGCCAATGCAGAGGAACTGGATAAATTATTACTGGGTGTCGGACCTGATA
AGGCTCGGAGTATTATTGAGTATCGTGATCAGCATGGTGAGTTTTCGACAGCAGATGACCTGAGCAAAGTGAAAGGGATT
GGGGCATCGACTGTAGAGAAAAATCGCGACAGAATTCAGCTCTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(32-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio campbellii strain DS40M4

52.747

96.809

0.511
  comEA Vibrio parahaemolyticus RIMD 2210633

60.563

75.532

0.457
  comEA Vibrio cholerae C6706

55.263

80.851

0.447
  comEA Vibrio cholerae strain A1552

55.263

80.851

0.447
  comEA Acinetobacter baylyi ADP1

56.923

69.149

0.394
  comEA/celA/cilE Streptococcus mitis NCTC 12261

42.683

87.234

0.372