Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   PDI73_RS02485 Genome accession   NZ_CP115479
Coordinates   520267..520572 (+) Length   101 a.a.
NCBI ID   WP_052062168.1    Uniprot ID   -
Organism   Lactococcus lactis strain EP2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 515267..525572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PDI73_RS02475 (PDI73_02475) - 516712..517026 (+) 315 WP_033900666.1 helix-turn-helix transcriptional regulator -
  PDI73_RS02480 (PDI73_02480) glf 517165..518302 (+) 1138 Protein_470 UDP-galactopyranose mutase -
  PDI73_RS02485 (PDI73_02485) ssbB 520267..520572 (+) 306 WP_052062168.1 single-stranded DNA-binding protein Machinery gene
  PDI73_RS02490 (PDI73_02490) - 520539..520706 (+) 168 WP_155273359.1 hypothetical protein -
  PDI73_RS02495 (PDI73_02495) - 521354..521716 (-) 363 WP_277730380.1 hypothetical protein -
  PDI73_RS02500 (PDI73_02500) pepV 522505..523923 (+) 1419 WP_033900922.1 dipeptidase PepV -
  PDI73_RS02505 (PDI73_02505) acpS 524026..524385 (+) 360 WP_021468491.1 holo-ACP synthase -
  PDI73_RS02510 (PDI73_02510) alr 524430..525533 (+) 1104 WP_277730381.1 alanine racemase -

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 11403.15 Da        Isoelectric Point: 10.1086

>NTDB_id=704772 PDI73_RS02485 WP_052062168.1 520267..520572(+) (ssbB) [Lactococcus lactis strain EP2]
MNNTHQIGHLSKDLELKKKPSNKSYVHFSIVVNRKSKNANGNCEADFIPCILWGEKAETLVKYASKVNRIGIDGELRTNP
IKTLQESNGLVWKFSSIILSF

Nucleotide


Download         Length: 306 bp        

>NTDB_id=704772 PDI73_RS02485 WP_052062168.1 520267..520572(+) (ssbB) [Lactococcus lactis strain EP2]
ATGAATAACACACACCAAATCGGACATTTGTCAAAAGACCTTGAACTTAAAAAGAAGCCTTCTAATAAAAGCTATGTTCA
TTTTTCGATTGTGGTAAACCGTAAGTCTAAAAATGCAAATGGCAATTGTGAAGCTGACTTTATTCCATGTATTCTTTGGG
GAGAAAAAGCAGAAACACTTGTGAAATATGCTTCAAAAGTAAATAGAATTGGAATTGATGGTGAATTACGAACTAATCCT
ATAAAGACTCTTCAGGAGTCAAACGGTTTAGTATGGAAGTTCTCGTCAATAATTTTGAGTTTTTAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(1-83)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Lactococcus lactis subsp. cremoris KW2

52.564

77.228

0.406
  ssbB/cilA Streptococcus pneumoniae Rx1

40.404

98.02

0.396
  ssbB/cilA Streptococcus pneumoniae D39

40.404

98.02

0.396
  ssbB/cilA Streptococcus pneumoniae R6

40.404

98.02

0.396
  ssbB/cilA Streptococcus mitis NCTC 12261

39.394

98.02

0.386
  ssbB/cilA Streptococcus pneumoniae TIGR4

41.489

93.069

0.386
  ssbB/cilA Streptococcus mitis SK321

41.489

93.069

0.386