Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   NHM04_RS02865 Genome accession   NZ_CP100350
Coordinates   691917..692207 (-) Length   96 a.a.
NCBI ID   WP_254265546.1    Uniprot ID   A0A9J7A6R9
Organism   Gilvimarinus sp. DA14     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 686917..697207
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NHM04_RS02845 (NHM04_02845) galU 687905..688801 (-) 897 WP_254265542.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  NHM04_RS02850 (NHM04_02850) - 688833..690188 (-) 1356 WP_254265543.1 phosphomannomutase CpsG -
  NHM04_RS02855 (NHM04_02855) cmk 690405..691073 (-) 669 WP_254265544.1 (d)CMP kinase -
  NHM04_RS02860 (NHM04_02860) pyrF 691081..691800 (-) 720 WP_254265545.1 orotidine-5'-phosphate decarboxylase -
  NHM04_RS02865 (NHM04_02865) comEA 691917..692207 (-) 291 WP_254265546.1 ComEA family DNA-binding protein Machinery gene
  NHM04_RS02870 (NHM04_02870) cysN 692343..693761 (-) 1419 WP_254265547.1 sulfate adenylyltransferase subunit CysN -
  NHM04_RS02875 (NHM04_02875) cysD 693838..694749 (-) 912 WP_254265548.1 sulfate adenylyltransferase subunit CysD -
  NHM04_RS02880 (NHM04_02880) - 694916..695824 (-) 909 WP_254265549.1 prephenate dehydrogenase/arogenate dehydrogenase family protein -
  NHM04_RS02885 (NHM04_02885) pheA 695827..696924 (-) 1098 WP_254265550.1 prephenate dehydratase -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10374.93 Da        Isoelectric Point: 3.8954

>NTDB_id=704691 NHM04_RS02865 WP_254265546.1 691917..692207(-) (comEA) [Gilvimarinus sp. DA14]
MKNYLKLIFLSLAILTFTPFTALADDAPAAVVETININIADAQTLTELKGIGEAKAEAIIAWREENGAFESPEQLLAVNG
IGEATLENIMQQITLQ

Nucleotide


Download         Length: 291 bp        

>NTDB_id=704691 NHM04_RS02865 WP_254265546.1 691917..692207(-) (comEA) [Gilvimarinus sp. DA14]
ATGAAAAACTACCTAAAGCTCATTTTTCTATCCCTCGCGATCCTCACTTTTACACCTTTTACAGCTTTAGCCGATGACGC
ACCTGCAGCGGTTGTTGAAACTATTAACATTAACATCGCAGATGCCCAGACTCTGACCGAGTTAAAGGGAATTGGTGAGG
CCAAAGCTGAGGCGATCATCGCGTGGCGGGAAGAGAATGGCGCGTTCGAAAGCCCGGAGCAGTTACTGGCCGTGAATGGT
ATCGGCGAGGCGACACTCGAAAATATTATGCAACAGATAACCCTGCAGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(33-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae strain A1552

47.059

100

0.5
  comEA Vibrio cholerae C6706

47.059

100

0.5
  comEA Legionella pneumophila str. Paris

41.758

94.792

0.396
  comEA Legionella pneumophila strain ERS1305867

41.758

94.792

0.396
  comEA Vibrio campbellii strain DS40M4

39.583

100

0.396
  comE1/comEA Haemophilus influenzae Rd KW20

50.685

76.042

0.385
  comEA Vibrio parahaemolyticus RIMD 2210633

40.659

94.792

0.385