Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EL335_RS10450 Genome accession   NZ_AP018718
Coordinates   2089581..2090021 (+) Length   146 a.a.
NCBI ID   WP_126446681.1    Uniprot ID   -
Organism   Sulfuricystis multivorans strain J5B     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2084581..2095021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL335_RS10435 - 2087725..2087976 (+) 252 WP_126446675.1 type II toxin-antitoxin system VapB family antitoxin -
  EL335_RS10440 - 2087973..2088374 (+) 402 WP_126446677.1 PIN domain nuclease -
  EL335_RS10445 - 2088387..2089571 (+) 1185 WP_126446679.1 MFS transporter -
  EL335_RS10450 ssb 2089581..2090021 (+) 441 WP_126446681.1 single-stranded DNA-binding protein Machinery gene
  EL335_RS10455 - 2090021..2091352 (+) 1332 WP_126446683.1 TAXI family TRAP transporter solute-binding subunit -
  EL335_RS10460 rfaE2 2091339..2091824 (-) 486 WP_284155502.1 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase -
  EL335_RS10465 - 2091824..2092474 (-) 651 WP_126446687.1 BON domain-containing protein -
  EL335_RS10470 - 2092471..2093064 (-) 594 WP_126446689.1 phosphoheptose isomerase -
  EL335_RS10475 - 2093118..2093477 (-) 360 WP_126446692.1 YraN family protein -
  EL335_RS10480 rsmI 2093476..2094306 (+) 831 WP_284155336.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 16347.30 Da        Isoelectric Point: 5.9710

>NTDB_id=70455 EL335_RS10450 WP_126446681.1 2089581..2090021(+) (ssb) [Sulfuricystis multivorans strain J5B]
MASVNKVILVGNLGADPEIRYLPNGDAVTNIRLATTESWKDKNTGERKEMTEWHRVVFYRKLAEIAGQYLKKGSQVYVEG
RLRTRKWQGQDGQDRYTTEIEANEMQMLGRREGMGEAGPRETGARPAPSAPATNGGFSDVEDDIPF

Nucleotide


Download         Length: 441 bp        

>NTDB_id=70455 EL335_RS10450 WP_126446681.1 2089581..2090021(+) (ssb) [Sulfuricystis multivorans strain J5B]
ATGGCCTCGGTGAACAAAGTGATTCTGGTGGGCAATCTCGGCGCGGACCCAGAGATCCGCTATCTGCCGAACGGCGATGC
CGTGACGAACATCCGGCTGGCCACCACTGAGAGCTGGAAGGACAAGAACACCGGCGAGAGGAAGGAGATGACCGAGTGGC
ACCGCGTGGTGTTCTATCGCAAGCTCGCCGAGATCGCCGGTCAGTATCTCAAGAAAGGATCGCAGGTCTATGTCGAAGGC
CGCCTGCGCACCCGCAAGTGGCAGGGACAGGACGGCCAGGACCGCTACACCACCGAGATCGAGGCCAACGAGATGCAGAT
GCTCGGCCGGCGCGAAGGCATGGGTGAGGCTGGTCCACGTGAGACTGGCGCGCGCCCCGCGCCAAGCGCCCCGGCGACGA
ATGGCGGCTTCAGTGACGTCGAGGACGACATTCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.542

100

0.637
  ssb Glaesserella parasuis strain SC1401

60.993

96.575

0.589
  ssb Neisseria gonorrhoeae MS11

48.276

100

0.575
  ssb Neisseria meningitidis MC58

47.701

100

0.568
  ssbB Streptococcus sobrinus strain NIDR 6715-7

37.838

100

0.384
  ssb Latilactobacillus sakei subsp. sakei 23K

31.395

100

0.37

Multiple sequence alignment