Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   NEE09_RS06505 Genome accession   NZ_CP099641
Coordinates   1241418..1242371 (-) Length   317 a.a.
NCBI ID   WP_000495896.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain ATCC 700671     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1236418..1247371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NEE09_RS06480 - 1236907..1237002 (-) 96 Protein_1229 IS630 family transposase -
  NEE09_RS06485 - 1237414..1237755 (+) 342 Protein_1230 transposase -
  NEE09_RS06490 prsA 1237874..1238815 (-) 942 WP_000727935.1 peptidylprolyl isomerase PrsA -
  NEE09_RS06495 - 1238882..1239595 (-) 714 WP_001810028.1 O-methyltransferase -
  NEE09_RS06500 pepF 1239597..1241399 (-) 1803 WP_000244124.1 oligoendopeptidase F Regulator
  NEE09_RS06505 coiA 1241418..1242371 (-) 954 WP_000495896.1 competence protein CoiA Machinery gene
  NEE09_RS06510 tehB 1242444..1243304 (-) 861 WP_000413762.1 SAM-dependent methyltransferase TehB -
  NEE09_RS06515 smpB 1243320..1243787 (-) 468 WP_001051750.1 SsrA-binding protein SmpB -
  NEE09_RS06520 rnr 1243750..1246104 (-) 2355 WP_000654871.1 ribonuclease R -
  NEE09_RS06525 secG 1246206..1246439 (-) 234 WP_000282517.1 preprotein translocase subunit SecG -
  NEE09_RS06530 rpmG 1246479..1246628 (-) 150 WP_001810029.1 50S ribosomal protein L33 -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 38243.86 Da        Isoelectric Point: 8.9865

>NTDB_id=701210 NEE09_RS06505 WP_000495896.1 1241418..1242371(-) (coiA) [Streptococcus pneumoniae strain ATCC 700671]
MFVARDARGELVNVLEDKLEKQAYTCPACGGQIHLRQGPSVRTHFAHKSLKDCDFFFENESPEHIANKESLYHWLKKETK
VQLEYPLSELKQIADVFVNGNLALEVQCSPLPQKVLKERSEGYRSQGYQVLWLLGQKLWLKERLTRLQQGFLYFSQNMGF
YVWELDKEKQVLRLKYLIYQDLRGKLHYQIKEFSYGQGSLLEILRLPYKRQKISHFTVSEDKDICRYIRQQLYYQNLFWM
KEQAEAYQKGENILTYGLKEWYPQIRPIVGKFFQIEQDLTSYYQHFYTYYQKNPQNDWQKLYPPAFYQQYFLKNMVE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=701210 NEE09_RS06505 WP_000495896.1 1241418..1242371(-) (coiA) [Streptococcus pneumoniae strain ATCC 700671]
ATGTTTGTTGCGAGAGATGCTAGGGGAGAATTGGTAAATGTGTTAGAGGATAAACTTGAGAAGCAAGCATACACCTGCCC
AGCTTGTGGAGGCCAGATCCATTTGCGTCAAGGACCAAGTGTACGGACGCATTTTGCCCATAAATCCTTAAAAGACTGTG
ATTTTTTCTTTGAAAATGAAAGTCCAGAACACATAGCCAATAAGGAATCCCTCTATCACTGGTTGAAAAAAGAGACAAAG
GTTCAATTAGAGTACCCGCTTTCAGAACTTAAACAGATTGCGGATGTATTTGTAAATGGCAATCTAGCTCTAGAAGTTCA
GTGTAGTCCCTTGCCTCAGAAAGTCCTTAAAGAGCGAAGTGAGGGCTATCGTAGTCAGGGTTACCAAGTACTGTGGTTGC
TGGGTCAAAAACTGTGGCTCAAGGAGCGTTTGACTCGTCTACAGCAAGGTTTTCTTTATTTCAGTCAAAACATGGGCTTT
TATGTTTGGGAATTAGACAAGGAAAAACAAGTTTTAAGACTCAAATACCTGATTTACCAGGATCTCCGCGGTAAACTCCA
TTATCAAATCAAGGAATTTTCCTATGGTCAAGGTAGTTTATTGGAAATATTGCGTCTTCCCTATAAGAGACAAAAAATAT
CTCATTTTACAGTTTCTGAGGACAAGGACATCTGTCGCTATATCCGGCAACAACTTTATTATCAAAATCTCTTTTGGATG
AAAGAACAAGCAGAAGCCTATCAAAAGGGAGAAAATATCCTGACTTATGGACTGAAAGAATGGTATCCACAAATTCGACC
AATAGTGGGCAAATTTTTCCAGATTGAACAAGACTTGACTAGCTATTATCAGCACTTTTATACCTATTACCAAAAAAATC
CTCAAAATGATTGGCAAAAGCTTTATCCACCAGCCTTTTATCAGCAATATTTCTTGAAAAATATGGTAGAATAG

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(13-263)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus pneumoniae TIGR4

99.369

100

0.994
  coiA Streptococcus pneumoniae Rx1

98.738

100

0.987
  coiA Streptococcus pneumoniae D39

98.738

100

0.987
  coiA Streptococcus pneumoniae R6

98.738

100

0.987
  coiA Streptococcus mitis NCTC 12261

88.644

100

0.886
  coiA Lactococcus lactis subsp. cremoris KW2

41.975

100

0.429