Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   NF679_RS22360 Genome accession   NZ_CP099601
Coordinates   4982010..4983710 (+) Length   566 a.a.
NCBI ID   WP_056790439.1    Uniprot ID   A0AAQ3G636
Organism   Pseudomonas siliginis strain OTU6MONEA1     
Function   power the assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4977010..4988710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NF679_RS22340 (NF679_22340) - 4977236..4980187 (+) 2952 WP_252868296.1 DUF748 domain-containing protein -
  NF679_RS22345 (NF679_22345) - 4980184..4980483 (+) 300 WP_095181833.1 DUF2845 domain-containing protein -
  NF679_RS22350 (NF679_22350) - 4980719..4981072 (-) 354 WP_252868297.1 BON domain-containing protein -
  NF679_RS22355 (NF679_22355) - 4981367..4981783 (-) 417 WP_056790436.1 pilin -
  NF679_RS22360 (NF679_22360) pilB 4982010..4983710 (+) 1701 WP_056790439.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NF679_RS22365 (NF679_22365) pilC 4983713..4984930 (+) 1218 WP_252868298.1 type II secretion system F family protein Machinery gene
  NF679_RS22370 (NF679_22370) pilD 4984932..4985804 (+) 873 WP_252868299.1 A24 family peptidase Machinery gene
  NF679_RS22375 (NF679_22375) coaE 4985801..4986424 (+) 624 WP_186569367.1 dephospho-CoA kinase -
  NF679_RS22380 (NF679_22380) yacG 4986421..4986621 (+) 201 WP_016773149.1 DNA gyrase inhibitor YacG -
  NF679_RS22385 (NF679_22385) - 4986629..4986844 (-) 216 WP_016773148.1 hypothetical protein -
  NF679_RS22390 (NF679_22390) - 4986910..4987599 (-) 690 WP_252868300.1 energy-coupling factor ABC transporter permease -
  NF679_RS22395 (NF679_22395) - 4987790..4988416 (+) 627 WP_007909887.1 DUF1780 domain-containing protein -

Sequence

Protein


Download         Length: 566 a.a.        Molecular weight: 62620.67 Da        Isoelectric Point: 6.1319

>NTDB_id=700992 NF679_RS22360 WP_056790439.1 4982010..4983710(+) (pilB) [Pseudomonas siliginis strain OTU6MONEA1]
MNDIALSGLAKQLVQAELLTETSARQSWAQAQRNRVSLVNYLVHNKLVNSRQIAEIASEHFGMALLDLHCLDKETQPKGL
VSEKLVRQHCALPLWRRGNKLFVGLSDPSNQQAISDIQFSTGLSTEAILVEDDKLSDAIDKFFDSHASGLEEMADVDLDG
LDVESIDDNKQDVIGGLDADDAPVVRFVHKMLLDAIKSGSSDLHFEPYEKNYRVRMRTDGMLREVAKPPIQLAGRIAARL
KVMASLDISERRKPQDGRIKMRLSKSKSIDFRVNTLPTLWGEKVVIRILDPSSAQMGIDALGYEAEQKALYLAALKQPQG
MILVTGPTGSGKTVSLYTGLNILNTVDINISTAEDPVEINMEGINQVNVNPRQGLDFAQALRSFLRQDPDVIMVGEIRDL
ETAEIAIKAAQTGHLVLSTLHTNSAAETLTRLHNMGIPGFNIATSVSLIIAQRLARKLCAHCKRPLEIPHETLLKEGFPE
ERIGHFTIYEPVGCDHCNGGYKGRVGIYEVVKNTPDLQRLIMAEGNSLEIDIQMRRDGFADLRTSGLHKAMQGITSLEEI
NRVTKD

Nucleotide


Download         Length: 1701 bp        

>NTDB_id=700992 NF679_RS22360 WP_056790439.1 4982010..4983710(+) (pilB) [Pseudomonas siliginis strain OTU6MONEA1]
ATGAATGACATCGCTCTGAGCGGTCTGGCCAAGCAATTGGTCCAGGCCGAACTGCTCACGGAAACAAGCGCCCGGCAATC
CTGGGCGCAGGCCCAGCGCAATCGCGTGTCTCTGGTCAATTACCTGGTGCACAACAAACTGGTCAACAGCCGGCAAATTG
CCGAGATCGCCTCGGAACATTTCGGCATGGCCCTGCTCGATCTGCATTGCCTCGACAAAGAGACTCAGCCCAAGGGTCTG
GTCAGTGAGAAACTGGTTCGCCAGCACTGCGCCCTGCCCCTCTGGCGGCGCGGCAACAAACTGTTCGTGGGCCTTTCCGA
CCCAAGCAATCAGCAGGCGATCAGCGACATCCAGTTCAGCACCGGCCTGAGCACCGAAGCGATTCTGGTGGAGGACGACA
AGCTCAGCGACGCCATCGACAAGTTCTTCGACAGCCATGCCTCGGGCCTGGAGGAAATGGCCGATGTCGATCTCGACGGC
CTCGACGTCGAGTCCATTGATGACAACAAACAGGACGTGATCGGCGGCCTCGATGCCGACGACGCCCCGGTCGTACGTTT
TGTGCACAAGATGCTGCTCGATGCGATCAAAAGCGGCTCTTCCGACCTGCATTTCGAACCCTACGAAAAAAACTATCGGG
TGCGCATGCGCACCGACGGCATGCTGCGCGAGGTGGCCAAGCCGCCGATCCAGTTGGCCGGGCGCATTGCCGCGCGCTTG
AAGGTAATGGCCAGTCTGGATATCTCGGAACGGCGCAAACCTCAGGACGGCCGCATCAAAATGCGCCTGTCGAAAAGCAA
ATCCATCGATTTTCGCGTCAACACCCTGCCGACTCTGTGGGGCGAAAAAGTGGTGATCCGGATTCTCGACCCGTCCAGTG
CACAAATGGGCATCGATGCACTGGGTTACGAAGCCGAACAAAAAGCCTTGTACCTCGCCGCGCTGAAACAGCCGCAAGGG
ATGATTCTGGTCACCGGCCCCACCGGCTCCGGTAAAACCGTGTCGCTGTACACCGGGCTGAATATCCTCAACACCGTCGA
CATCAACATTTCCACCGCCGAAGACCCGGTGGAAATCAACATGGAAGGCATCAACCAGGTCAACGTCAATCCCCGCCAAG
GGCTGGACTTTGCCCAGGCGCTGCGCTCGTTTCTGCGTCAGGACCCGGACGTGATCATGGTCGGCGAGATCCGCGATCTG
GAAACCGCCGAGATCGCGATCAAGGCCGCGCAGACCGGCCACTTGGTACTGTCGACCCTGCACACCAACAGCGCGGCGGA
AACCCTCACGCGCCTGCACAACATGGGCATTCCCGGTTTCAACATCGCCACCTCGGTCAGCCTGATCATCGCCCAGCGTC
TGGCGCGCAAATTGTGCGCGCACTGCAAGCGGCCGCTGGAAATCCCCCACGAAACCTTGCTCAAGGAAGGCTTCCCTGAG
GAACGCATCGGTCATTTCACGATCTACGAGCCGGTCGGTTGCGATCACTGCAACGGCGGTTACAAAGGACGCGTGGGGAT
TTATGAAGTGGTAAAGAACACACCGGACCTGCAACGGTTGATCATGGCCGAGGGCAATTCGCTGGAAATCGACATCCAGA
TGCGTCGCGACGGTTTCGCCGATCTGCGCACCTCCGGGCTGCACAAGGCCATGCAAGGCATCACCAGCCTTGAGGAAATC
AACCGGGTCACCAAGGATTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(42-147)

Type II/IV secretion system protein (T2SSE)

(190-457)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Acinetobacter baylyi ADP1

57.699

99.823

0.576
  pilB Acinetobacter baumannii D1279779

57.447

99.647

0.572
  pilB Legionella pneumophila strain ERS1305867

56.537

100

0.565
  pilB Vibrio cholerae strain A1552

50.619

99.823

0.505
  pilB Vibrio parahaemolyticus RIMD 2210633

50.446

99.117

0.5
  pilF Neisseria gonorrhoeae MS11

50

99.647

0.498
  pilB Vibrio campbellii strain DS40M4

49.209

100

0.495
  pilB Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

38.837

94.17

0.366