Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | NF679_RS22370 | Genome accession | NZ_CP099601 |
| Coordinates | 4984932..4985804 (+) | Length | 290 a.a. |
| NCBI ID | WP_252868299.1 | Uniprot ID | - |
| Organism | Pseudomonas siliginis strain OTU6MONEA1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4979932..4990804
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NF679_RS22345 (NF679_22345) | - | 4980184..4980483 (+) | 300 | WP_095181833.1 | DUF2845 domain-containing protein | - |
| NF679_RS22350 (NF679_22350) | - | 4980719..4981072 (-) | 354 | WP_252868297.1 | BON domain-containing protein | - |
| NF679_RS22355 (NF679_22355) | - | 4981367..4981783 (-) | 417 | WP_056790436.1 | pilin | - |
| NF679_RS22360 (NF679_22360) | pilB | 4982010..4983710 (+) | 1701 | WP_056790439.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| NF679_RS22365 (NF679_22365) | pilC | 4983713..4984930 (+) | 1218 | WP_252868298.1 | type II secretion system F family protein | Machinery gene |
| NF679_RS22370 (NF679_22370) | pilD | 4984932..4985804 (+) | 873 | WP_252868299.1 | A24 family peptidase | Machinery gene |
| NF679_RS22375 (NF679_22375) | coaE | 4985801..4986424 (+) | 624 | WP_186569367.1 | dephospho-CoA kinase | - |
| NF679_RS22380 (NF679_22380) | yacG | 4986421..4986621 (+) | 201 | WP_016773149.1 | DNA gyrase inhibitor YacG | - |
| NF679_RS22385 (NF679_22385) | - | 4986629..4986844 (-) | 216 | WP_016773148.1 | hypothetical protein | - |
| NF679_RS22390 (NF679_22390) | - | 4986910..4987599 (-) | 690 | WP_252868300.1 | energy-coupling factor ABC transporter permease | - |
| NF679_RS22395 (NF679_22395) | - | 4987790..4988416 (+) | 627 | WP_007909887.1 | DUF1780 domain-containing protein | - |
| NF679_RS22400 (NF679_22400) | - | 4988413..4988940 (+) | 528 | WP_252868301.1 | MOSC domain-containing protein | - |
| NF679_RS22405 (NF679_22405) | - | 4988992..4989165 (+) | 174 | WP_007909875.1 | DUF3094 domain-containing protein | - |
| NF679_RS22410 (NF679_22410) | - | 4989229..4990527 (+) | 1299 | WP_016773144.1 | NAD(P)/FAD-dependent oxidoreductase | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31882.07 Da Isoelectric Point: 7.3655
>NTDB_id=700994 NF679_RS22370 WP_252868299.1 4984932..4985804(+) (pilD) [Pseudomonas siliginis strain OTU6MONEA1]
MSIDELFAVYPLAFVVSALLLGLVVGSFLNVVVWRLPKMLERDWRQQAHDVLGLPTETPVPTYNLMLPHSACPHCGHRIR
PWENIPLLSYLLLRGRCSACSAPISKRYPLTELACGVLSAFIAWHLGFGWPAGLLILLTWGLLAMSLIDCEHQLLPDVLV
LPLLWLGLIVNSFGVFVALPDALWGAVAGYLALWSVFWLFKLLTGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AILGVVMLRLRAQESSTPIPFGPFLAIAGWIALLWGGQITDFYWQSVGLK
MSIDELFAVYPLAFVVSALLLGLVVGSFLNVVVWRLPKMLERDWRQQAHDVLGLPTETPVPTYNLMLPHSACPHCGHRIR
PWENIPLLSYLLLRGRCSACSAPISKRYPLTELACGVLSAFIAWHLGFGWPAGLLILLTWGLLAMSLIDCEHQLLPDVLV
LPLLWLGLIVNSFGVFVALPDALWGAVAGYLALWSVFWLFKLLTGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AILGVVMLRLRAQESSTPIPFGPFLAIAGWIALLWGGQITDFYWQSVGLK
Nucleotide
Download Length: 873 bp
>NTDB_id=700994 NF679_RS22370 WP_252868299.1 4984932..4985804(+) (pilD) [Pseudomonas siliginis strain OTU6MONEA1]
ATGTCTATCGATGAACTGTTTGCCGTGTATCCGCTGGCCTTTGTGGTCAGCGCGCTGCTGCTCGGGCTGGTGGTCGGCAG
CTTCCTCAACGTAGTGGTCTGGCGCCTGCCGAAGATGCTCGAGCGCGACTGGCGCCAGCAGGCCCATGATGTGCTCGGCC
TGCCCACTGAAACGCCTGTGCCGACCTACAACCTGATGCTGCCGCACTCCGCGTGCCCGCATTGCGGACACCGGATCCGC
CCTTGGGAAAACATTCCGCTGCTCAGTTATCTGCTGCTGCGCGGTCGCTGCTCGGCCTGCTCGGCGCCGATCAGCAAACG
TTACCCGCTGACCGAACTGGCCTGCGGCGTCCTCTCGGCGTTCATTGCCTGGCATCTCGGCTTCGGTTGGCCGGCAGGTC
TGCTGATCTTGCTGACATGGGGCTTGCTGGCGATGAGTCTGATCGACTGCGAACATCAGCTGCTGCCCGATGTGCTAGTG
CTGCCGCTGCTGTGGCTGGGGCTGATCGTCAACAGCTTCGGCGTGTTCGTGGCGTTGCCCGATGCGTTGTGGGGCGCGGT
CGCGGGTTATCTGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAACTGCTCACCGGCAAGGACGGTATCGGCCATGGCGATT
TCAAGCTGTTGGCCTTGCTCGGCGCATGGGGTGGCTGGCAGATTCTGCCGCTGACGATTCTTCTATCTTCCCTGGTGGGG
GCGATATTGGGCGTTGTCATGCTGCGTCTGCGCGCCCAGGAATCCTCGACGCCGATCCCCTTCGGACCCTTTCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTCTGTCGGTTTGAAATGA
ATGTCTATCGATGAACTGTTTGCCGTGTATCCGCTGGCCTTTGTGGTCAGCGCGCTGCTGCTCGGGCTGGTGGTCGGCAG
CTTCCTCAACGTAGTGGTCTGGCGCCTGCCGAAGATGCTCGAGCGCGACTGGCGCCAGCAGGCCCATGATGTGCTCGGCC
TGCCCACTGAAACGCCTGTGCCGACCTACAACCTGATGCTGCCGCACTCCGCGTGCCCGCATTGCGGACACCGGATCCGC
CCTTGGGAAAACATTCCGCTGCTCAGTTATCTGCTGCTGCGCGGTCGCTGCTCGGCCTGCTCGGCGCCGATCAGCAAACG
TTACCCGCTGACCGAACTGGCCTGCGGCGTCCTCTCGGCGTTCATTGCCTGGCATCTCGGCTTCGGTTGGCCGGCAGGTC
TGCTGATCTTGCTGACATGGGGCTTGCTGGCGATGAGTCTGATCGACTGCGAACATCAGCTGCTGCCCGATGTGCTAGTG
CTGCCGCTGCTGTGGCTGGGGCTGATCGTCAACAGCTTCGGCGTGTTCGTGGCGTTGCCCGATGCGTTGTGGGGCGCGGT
CGCGGGTTATCTGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAACTGCTCACCGGCAAGGACGGTATCGGCCATGGCGATT
TCAAGCTGTTGGCCTTGCTCGGCGCATGGGGTGGCTGGCAGATTCTGCCGCTGACGATTCTTCTATCTTCCCTGGTGGGG
GCGATATTGGGCGTTGTCATGCTGCGTCTGCGCGCCCAGGAATCCTCGACGCCGATCCCCTTCGGACCCTTTCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTCTGTCGGTTTGAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
53.873 |
97.931 |
0.528 |
| pilD | Vibrio campbellii strain DS40M4 |
52.982 |
98.276 |
0.521 |
| pilD | Neisseria gonorrhoeae MS11 |
46.69 |
98.966 |
0.462 |
| pilD | Acinetobacter baumannii D1279779 |
46.715 |
94.483 |
0.441 |
| pilD | Acinetobacter nosocomialis M2 |
46.715 |
94.483 |
0.441 |