Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PCP24_RS22740 Genome accession   NZ_CP115273
Coordinates   4909324..4909749 (-) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain F016     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4904324..4914749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP24_RS22720 (PCP24_22715) ileS 4904481..4907312 (+) 2832 WP_003102617.1 isoleucine--tRNA ligase -
  PCP24_RS22725 (PCP24_22720) lspA 4907305..4907814 (+) 510 WP_003110420.1 signal peptidase II -
  PCP24_RS22730 (PCP24_22725) fkpB 4907807..4908247 (+) 441 WP_003161775.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  PCP24_RS22735 (PCP24_22730) ispH 4908333..4909277 (+) 945 WP_034021636.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  PCP24_RS22740 (PCP24_22735) comF 4909324..4909749 (-) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  PCP24_RS22745 (PCP24_22740) pilY2 4909746..4910093 (-) 348 WP_003102609.1 type 4a fimbrial biogenesis protein PilY2 -
  PCP24_RS22750 (PCP24_22745) pilY1 4910095..4913586 (-) 3492 WP_003123397.1 type 4a pilus biogenesis protein PilY1 -
  PCP24_RS22755 (PCP24_22750) pilX 4913598..4914185 (-) 588 WP_003112826.1 type 4a pilus minor pilin PilX -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=700994 PCP24_RS22740 WP_003094721.1 4909324..4909749(-) (comF) [Pseudomonas aeruginosa strain F016]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=700994 PCP24_RS22740 WP_003094721.1 4909324..4909749(-) (comF) [Pseudomonas aeruginosa strain F016]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCCCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383