Detailed information NTG0700875

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PCP39_RS15000
• Genome accession: NZ_CP115272
• Coordinates: 3237993..3238997 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain F017
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3232993..3243997

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PCP39_RS14970 (PCP39_14980)	fghA	3233085..3233936 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
PCP39_RS14975 (PCP39_14985)	ispF	3234007..3234480 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PCP39_RS14980 (PCP39_14990)	truD	3234477..3235544 (+)	1068	WP_003098559.1	tRNA pseudouridine(13) synthase TruD	-
PCP39_RS14985 (PCP39_14995)	surE	3235532..3236281 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PCP39_RS14990 (PCP39_15000)	-	3236314..3236949 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PCP39_RS14995 (PCP39_15005)	-	3236995..3237888 (+)	894	WP_010791885.1	peptidoglycan DD-metalloendopeptidase family protein	-
PCP39_RS15000 (PCP39_15010)	rpoS	3237993..3238997 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PCP39_RS15005 (PCP39_15015)	fdxA	3239424..3239747 (-)	324	WP_003119354.1	ferredoxin FdxA	-
PCP39_RS15010 (PCP39_15020)	mutS	3239814..3242381 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
PCP39_RS15015 (PCP39_15025)	-	3242507..3243514 (-)	1008	WP_003098486.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=700875 PCP39_RS15000 WP_003113871.1 3237993..3238997(+) (rpoS) [Pseudomonas aeruginosa strain F017]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=700875 PCP39_RS15000 WP_003113871.1 3237993..3238997(+) (rpoS) [Pseudomonas aeruginosa strain F017]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653