Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | NF675_RS22150 | Genome accession | NZ_CP099596 |
| Coordinates | 5054304..5055176 (+) | Length | 290 a.a. |
| NCBI ID | WP_252878912.1 | Uniprot ID | - |
| Organism | Pseudomonas siliginis strain OTU6BAGNBB1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5049304..5060176
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NF675_RS22125 (NF675_22125) | - | 5049531..5049830 (+) | 300 | WP_252878910.1 | DUF2845 domain-containing protein | - |
| NF675_RS22130 (NF675_22130) | - | 5050095..5050448 (-) | 354 | WP_252878911.1 | BON domain-containing protein | - |
| NF675_RS22135 (NF675_22135) | - | 5050739..5051155 (-) | 417 | WP_071173630.1 | pilin | - |
| NF675_RS22140 (NF675_22140) | pilB | 5051382..5053082 (+) | 1701 | WP_056790439.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| NF675_RS22145 (NF675_22145) | pilC | 5053085..5054302 (+) | 1218 | WP_041477818.1 | type II secretion system F family protein | Machinery gene |
| NF675_RS22150 (NF675_22150) | pilD | 5054304..5055176 (+) | 873 | WP_252878912.1 | A24 family peptidase | Machinery gene |
| NF675_RS22155 (NF675_22155) | coaE | 5055173..5055796 (+) | 624 | WP_076564149.1 | dephospho-CoA kinase | - |
| NF675_RS22160 (NF675_22160) | yacG | 5055793..5055993 (+) | 201 | WP_016773149.1 | DNA gyrase inhibitor YacG | - |
| NF675_RS22165 (NF675_22165) | - | 5056001..5056216 (-) | 216 | WP_016773148.1 | hypothetical protein | - |
| NF675_RS22170 (NF675_22170) | - | 5056282..5056971 (-) | 690 | WP_041477814.1 | energy-coupling factor ABC transporter permease | - |
| NF675_RS22175 (NF675_22175) | - | 5057162..5057788 (+) | 627 | WP_007909887.1 | DUF1780 domain-containing protein | - |
| NF675_RS22180 (NF675_22180) | - | 5057785..5058312 (+) | 528 | WP_160768590.1 | MOSC domain-containing protein | - |
| NF675_RS22185 (NF675_22185) | - | 5058364..5058537 (+) | 174 | WP_007909875.1 | DUF3094 domain-containing protein | - |
| NF675_RS22190 (NF675_22190) | - | 5058604..5059902 (+) | 1299 | WP_016773144.1 | NAD(P)/FAD-dependent oxidoreductase | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31965.17 Da Isoelectric Point: 7.3655
>NTDB_id=700877 NF675_RS22150 WP_252878912.1 5054304..5055176(+) (pilD) [Pseudomonas siliginis strain OTU6BAGNBB1]
MPIDELFAVYPLAFVVSALLLGLVVGSFLNVVVWRLPKMLERDWRQQAHDVLGLPTETPVPTYNLMLPHSACPHCGHRIR
PWENIPLLSYLWLRGRCSGCSAPISKRYPLTELACGVLSAFIAWHLGFGWPAGLLILLTWGLLAMSLIDCEHQLLPDVLV
LPLLWLGLIVNSFGVFVALPDALWGAVAGYLALWSVFWLFKLLTGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AILGVVMLRLRAQETSTPIPFGPFLAIAGWIALLWGGQITDFYWQSVGLK
MPIDELFAVYPLAFVVSALLLGLVVGSFLNVVVWRLPKMLERDWRQQAHDVLGLPTETPVPTYNLMLPHSACPHCGHRIR
PWENIPLLSYLWLRGRCSGCSAPISKRYPLTELACGVLSAFIAWHLGFGWPAGLLILLTWGLLAMSLIDCEHQLLPDVLV
LPLLWLGLIVNSFGVFVALPDALWGAVAGYLALWSVFWLFKLLTGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AILGVVMLRLRAQETSTPIPFGPFLAIAGWIALLWGGQITDFYWQSVGLK
Nucleotide
Download Length: 873 bp
>NTDB_id=700877 NF675_RS22150 WP_252878912.1 5054304..5055176(+) (pilD) [Pseudomonas siliginis strain OTU6BAGNBB1]
ATGCCTATCGACGAACTGTTTGCCGTGTATCCGCTGGCCTTTGTGGTCAGCGCGCTGCTGCTCGGGCTGGTGGTCGGCAG
CTTCCTCAACGTAGTGGTCTGGCGCCTGCCGAAGATGCTCGAGCGCGACTGGCGCCAGCAGGCCCATGATGTGCTCGGCC
TGCCCACTGAAACGCCTGTGCCGACCTACAACCTGATGCTGCCGCACTCCGCGTGCCCGCATTGCGGACACCGGATCCGC
CCTTGGGAAAACATTCCGCTGCTCAGTTATCTGTGGCTGCGCGGGCGATGCTCAGGCTGCTCGGCGCCGATCAGCAAACG
TTACCCGCTGACCGAACTGGCCTGCGGCGTCCTCTCGGCATTCATTGCCTGGCATCTCGGCTTCGGTTGGCCGGCAGGTC
TGCTGATCTTGCTGACATGGGGCTTGCTGGCGATGAGTCTGATCGACTGCGAACATCAGCTGCTGCCCGATGTGCTGGTG
CTGCCGCTGCTGTGGCTGGGGCTGATCGTCAACAGCTTCGGCGTGTTCGTGGCGTTGCCCGATGCGTTGTGGGGCGCGGT
CGCGGGTTATCTGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAACTGCTCACCGGCAAGGACGGTATCGGCCATGGCGATT
TCAAGCTGTTGGCCTTGCTCGGCGCATGGGGTGGCTGGCAGATTCTGCCGCTGACGATTCTTCTATCTTCCCTGGTGGGG
GCGATATTGGGCGTTGTCATGCTGCGTCTGCGCGCCCAGGAAACCTCGACGCCGATCCCCTTCGGACCCTTTCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTCTGTCGGTTTGAAATGA
ATGCCTATCGACGAACTGTTTGCCGTGTATCCGCTGGCCTTTGTGGTCAGCGCGCTGCTGCTCGGGCTGGTGGTCGGCAG
CTTCCTCAACGTAGTGGTCTGGCGCCTGCCGAAGATGCTCGAGCGCGACTGGCGCCAGCAGGCCCATGATGTGCTCGGCC
TGCCCACTGAAACGCCTGTGCCGACCTACAACCTGATGCTGCCGCACTCCGCGTGCCCGCATTGCGGACACCGGATCCGC
CCTTGGGAAAACATTCCGCTGCTCAGTTATCTGTGGCTGCGCGGGCGATGCTCAGGCTGCTCGGCGCCGATCAGCAAACG
TTACCCGCTGACCGAACTGGCCTGCGGCGTCCTCTCGGCATTCATTGCCTGGCATCTCGGCTTCGGTTGGCCGGCAGGTC
TGCTGATCTTGCTGACATGGGGCTTGCTGGCGATGAGTCTGATCGACTGCGAACATCAGCTGCTGCCCGATGTGCTGGTG
CTGCCGCTGCTGTGGCTGGGGCTGATCGTCAACAGCTTCGGCGTGTTCGTGGCGTTGCCCGATGCGTTGTGGGGCGCGGT
CGCGGGTTATCTGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAACTGCTCACCGGCAAGGACGGTATCGGCCATGGCGATT
TCAAGCTGTTGGCCTTGCTCGGCGCATGGGGTGGCTGGCAGATTCTGCCGCTGACGATTCTTCTATCTTCCCTGGTGGGG
GCGATATTGGGCGTTGTCATGCTGCGTCTGCGCGCCCAGGAAACCTCGACGCCGATCCCCTTCGGACCCTTTCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTCTGTCGGTTTGAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
53.873 |
97.931 |
0.528 |
| pilD | Vibrio campbellii strain DS40M4 |
52.632 |
98.276 |
0.517 |
| pilD | Neisseria gonorrhoeae MS11 |
46.341 |
98.966 |
0.459 |
| pilD | Acinetobacter baumannii D1279779 |
46.715 |
94.483 |
0.441 |
| pilD | Acinetobacter nosocomialis M2 |
46.715 |
94.483 |
0.441 |