Detailed information NTG0700452

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: NG827_RS05675
• Genome accession: NZ_CP099533
• Coordinates: 1334420..1335808 (-)
• Length: 462 a.a.
• NCBI ID: WP_043095008.1
• Uniprot ID: A0AAW9GVB5
• Organism: Xanthomonas sacchari strain LT6-2
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 1329420..1340808

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NG827_RS05660 (NG827_05650)	pilC	1330119..1331378 (-)	1260	WP_267098127.1	type II secretion system F family protein	Machinery gene
NG827_RS05665 (NG827_05655)	-	1331737..1332177 (+)	441	WP_267098128.1	pilin	-
NG827_RS05670 (NG827_05660)	pilB	1332456..1334189 (+)	1734	WP_267098129.1	type IV-A pilus assembly ATPase PilB	Machinery gene
NG827_RS05675 (NG827_05665)	pilR	1334420..1335808 (-)	1389	WP_043095008.1	sigma-54 dependent transcriptional regulator	Regulator
NG827_RS05680 (NG827_05670)	-	1335891..1337504 (-)	1614	WP_267098130.1	ATP-binding protein	-
NG827_RS05685 (NG827_05675)	sucC	1337896..1339065 (+)	1170	WP_010342227.1	ADP-forming succinate--CoA ligase subunit beta	-
NG827_RS05690 (NG827_05680)	sucD	1339088..1339963 (+)	876	WP_010342226.1	succinate--CoA ligase subunit alpha	-

Sequence

Protein

• Length: 462 a.a.
• Molecular weight: 49908.29 Da
• Isoelectric Point: 6.6703

>NTDB_id=700452 NG827_RS05675 WP_043095008.1 1334420..1335808(-) (pilR) [Xanthomonas sacchari strain LT6-2]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIAKHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIQVLRGLVKHALELNNESRAAPPQPAPEQASRLLGASAAMDALRSTIAKVAR
NQAPVYILGESGVGKELVARTIHEQGARSAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADQAGLFQAAHGGTLFLD
EVAELPLPMQVKLLRAIQEKSVRPVGAATEVPVDVRILSATHKDLADLVAEGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAILARLAKSHGRPTPLLSPSALDALSSYAFPGNVRELENILERALAMAEDDQISATDLRLPQPGNHARSAAEAAPA
LPRGVVDIDPSSSALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1389 bp

>NTDB_id=700452 NG827_RS05675 WP_043095008.1 1334420..1335808(-) (pilR) [Xanthomonas sacchari strain LT6-2]
ATGAACGAAACCCGAAGCGCCCTGGTCGTCGACGACGAGCGCGACATCCGCGAGTTGCTGGTCCTGACCCTGGGCCGGAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTCGCCGAAGCGCGCGAACTGCTGGCGAGCAATCCCTACGATCTGTGCATCA
CCGACATGCGCCTGCCCGACGGCAACGGCATCGAGCTGGTCAGCGAGATCGCCAAACACTACCCGCGCACGCCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGACCTGGCGGTGGAGGCGCTGAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACATCCAGGTGCTGCGCGGCCTGGTCAAGCATGCACTGGAACTCAACAACGAAAGCCGCGCCGCGCCGCCGCAGCCTG
CCCCGGAGCAGGCCAGCCGCCTGCTTGGCGCCTCGGCGGCGATGGACGCCCTGCGCAGCACCATCGCCAAGGTCGCGCGC
AACCAGGCGCCGGTCTACATCCTCGGCGAATCCGGCGTGGGCAAGGAACTGGTCGCGCGCACCATCCACGAACAGGGCGC
CCGCTCCGCCGGCCCCTTCGTTCCGGTGAACTGCGGCGCGATCCCGGCCGAACTGATGGAAAGCGAGTTCTTCGGCCACA
AGAAGGGCAGCTTCACCGGCGCCCACGCCGACCAGGCCGGCCTGTTCCAGGCCGCGCACGGCGGCACCCTGTTCCTCGAC
GAGGTCGCCGAACTGCCGCTGCCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAATCGGTGCGCCCGGTCGGCGC
CGCCACCGAGGTGCCGGTGGACGTGCGCATCCTCTCGGCCACCCACAAGGACCTGGCCGACCTGGTCGCCGAGGGCCGCT
TCCGCCACGACCTGTACTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAGCGCGGCGGCGACCTGCCG
CAACTGGCCGCGGCGATCCTGGCGCGGCTGGCCAAGAGCCACGGCCGGCCCACCCCGCTGCTGTCGCCCTCTGCCCTGGA
CGCACTGAGCAGCTACGCCTTCCCCGGCAACGTGCGCGAACTGGAAAACATCCTCGAGCGCGCCCTGGCAATGGCCGAGG
ACGACCAGATCAGCGCCACCGACCTGCGCCTGCCGCAACCCGGCAACCACGCCCGCAGCGCCGCCGAAGCCGCCCCGGCC
CTGCCGCGCGGCGTGGTCGACATCGACCCCAGCTCCTCCGCCCTGCCGTCCTACATCGAGCAACTCGAACGCGCCGCGAT
CCAGAAAGCGCTGGAAGAGAACCGCTGGAACAAGACCCGCACCGCCGCGCAGTTGGGCATCACCTTTCGGGCGTTGCGCT
ACAAGCTGAAGAAGCTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (142-307)

• Response regulator receiver domain (Response_reg) (8-115)

• Bacterial regulatory protein, Fis family (HTH_8) (419-459)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	62.826	99.567	0.626
pilR	Acinetobacter baumannii strain A118	47.084	100	0.472