Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   LPT20_RS04755 Genome accession   NZ_CP099504
Coordinates   996389..996958 (-) Length   189 a.a.
NCBI ID   WP_000872872.1    Uniprot ID   A0AB73JJN0
Organism   Staphylococcus aureus strain S36     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 991389..1001958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPT20_RS04715 (LPT20_04715) - 991863..992471 (-) 609 WP_000020296.1 class I SAM-dependent methyltransferase -
  LPT20_RS04720 (LPT20_04720) rplL 992646..993014 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  LPT20_RS04725 (LPT20_04725) rplJ 993057..993557 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  LPT20_RS04730 (LPT20_04730) rplA 993829..994521 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  LPT20_RS04735 (LPT20_04735) rplK 994729..995151 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  LPT20_RS04740 (LPT20_04740) nusG 995332..995880 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  LPT20_RS04745 (LPT20_04745) secE 995893..996075 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  LPT20_RS04750 (LPT20_04750) rpmG 996131..996274 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  LPT20_RS04755 (LPT20_04755) sigH 996389..996958 (-) 570 WP_000872872.1 RNA polymerase sigma factor Regulator
  LPT20_RS04760 (LPT20_04760) - 997039..997563 (-) 525 WP_229360050.1 NYN domain-containing protein -
  LPT20_RS04765 (LPT20_04765) rlmB 997563..998309 (-) 747 WP_000390339.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  LPT20_RS04770 (LPT20_04770) - 998317..998721 (-) 405 WP_000370186.1 Mini-ribonuclease 3 -
  LPT20_RS04775 (LPT20_04775) cysS 998714..1000114 (-) 1401 WP_000631977.1 cysteine--tRNA ligase -
  LPT20_RS04780 (LPT20_04780) cysE 1000098..1000745 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23079.92 Da        Isoelectric Point: 9.6015

>NTDB_id=700186 LPT20_RS04755 WP_000872872.1 996389..996958(-) (sigH) [Staphylococcus aureus strain S36]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRIDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=700186 LPT20_RS04755 WP_000872872.1 996389..996958(-) (sigH) [Staphylococcus aureus strain S36]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAACAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATAGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAGCGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979