Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   LLCC_RS09565 Genome accession   NZ_AP018499
Coordinates   1841067..1841717 (+) Length   216 a.a.
NCBI ID   WP_061777995.1    Uniprot ID   A0AAD1JWM8
Organism   Lactococcus cremoris strain C4     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1836067..1846717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLCC_RS09540 (LLCC_2024) - 1836579..1837346 (-) 768 WP_011676099.1 5'-nucleotidase -
  LLCC_RS09545 (LLCC_2025) - 1837455..1838474 (-) 1020 WP_032951092.1 DUF475 domain-containing protein -
  LLCC_RS09550 (LLCC_2026) - 1838540..1839040 (-) 501 WP_014572521.1 VanZ family protein -
  LLCC_RS09555 (LLCC_2027) - 1839082..1839717 (-) 636 WP_011676097.1 YigZ family protein -
  LLCC_RS14705 - 1839774..1841067 (+) 1294 Protein_1854 helicase-related protein -
  LLCC_RS09565 (LLCC_2029) comFC 1841067..1841717 (+) 651 WP_061777995.1 ComF family protein Machinery gene
  LLCC_RS09570 (LLCC_2030) - 1841775..1842353 (-) 579 WP_011676095.1 nucleotidyltransferase family protein -
  LLCC_RS09575 (LLCC_2031) - 1842370..1842825 (-) 456 WP_011676094.1 diacylglycerol kinase family protein -
  LLCC_RS09580 (LLCC_2032) ybeY 1842809..1843297 (-) 489 WP_011835335.1 rRNA maturation RNase YbeY -
  LLCC_RS09585 (LLCC_2033) - 1843388..1843882 (-) 495 WP_011676092.1 NUDIX hydrolase -
  LLCC_RS09590 (LLCC_2034) - 1843952..1844920 (-) 969 WP_021165232.1 PhoH family protein -
  LLCC_RS09595 (LLCC_2035) - 1844994..1846526 (-) 1533 WP_015082368.1 Nramp family divalent metal transporter -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25230.49 Da        Isoelectric Point: 9.8562

>NTDB_id=69810 LLCC_RS09565 WP_061777995.1 1841067..1841717(+) (comFC) [Lactococcus cremoris strain C4]
MQTCLLCSRIIKQTLTFSEFFLLKNNRNLICNKCQSLFKKIPNERCPRCSKSNSKGICADCLKWEEKGIIVNHQSIFIYN
QAMKDYFSLYKFMGDYRLHEVFDSYFKNLSKKIPLVPIPVSPKRLQERGFNQVTAFLKDRAYLDLLEKEDTVRQSSLNRE
GRLSTSNPFKLKEGEKIPQKIILIDDIYTTGTTFYHAIKTLKKANPIEITTFSLCR

Nucleotide


Download         Length: 651 bp        

>NTDB_id=69810 LLCC_RS09565 WP_061777995.1 1841067..1841717(+) (comFC) [Lactococcus cremoris strain C4]
ATGCAAACTTGTCTGCTTTGTTCCAGAATTATCAAACAAACACTCACTTTTAGTGAATTCTTTTTACTAAAGAATAACAG
AAATTTAATATGCAATAAATGCCAATCACTGTTTAAAAAAATTCCTAACGAACGTTGTCCTCGTTGCTCTAAATCTAACT
CTAAAGGTATATGTGCTGACTGTCTCAAGTGGGAAGAAAAAGGAATCATTGTTAATCATCAGTCAATTTTTATTTATAAC
CAAGCAATGAAGGATTACTTTAGTCTTTACAAATTTATGGGAGATTATCGATTACACGAAGTCTTCGATTCCTATTTTAA
AAATTTGTCCAAAAAAATTCCTCTGGTTCCCATTCCGGTTTCTCCTAAAAGATTACAAGAAAGAGGTTTTAACCAAGTAA
CAGCTTTTCTAAAAGATAGAGCTTATCTTGATTTGCTTGAAAAAGAGGATACTGTCAGACAATCAAGTCTTAATCGCGAG
GGACGTCTATCAACTAGCAATCCTTTTAAGTTGAAAGAGGGTGAAAAAATACCCCAAAAAATCATTTTGATTGATGATAT
TTATACAACTGGAACTACTTTTTATCATGCAATAAAAACCTTAAAGAAAGCTAATCCGATTGAAATTACAACTTTTTCAC
TCTGCCGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Lactococcus lactis subsp. cremoris KW2

98.507

62.037

0.611
  comFC/cflB Streptococcus mitis NCTC 12261

49.541

100

0.5
  comFC/cflB Streptococcus pneumoniae Rx1

47.248

100

0.477
  comFC/cflB Streptococcus pneumoniae D39

47.248

100

0.477
  comFC/cflB Streptococcus pneumoniae R6

47.248

100

0.477
  comFC/cflB Streptococcus pneumoniae TIGR4

47.248

100

0.477
  comFC/cflB Streptococcus mitis SK321

47.248

100

0.477
  comFC Bacillus subtilis subsp. subtilis str. 168

34.802

100

0.366

Multiple sequence alignment