Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   NDK47_RS27405 Genome accession   NZ_CP098755
Coordinates   5598862..5599320 (-) Length   152 a.a.
NCBI ID   WP_251872870.1    Uniprot ID   -
Organism   Brevibacillus ruminantium strain BB3-R1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5593862..5604320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDK47_RS27385 (NDK47_27385) rplI 5595135..5595581 (-) 447 WP_251872866.1 50S ribosomal protein L9 -
  NDK47_RS27390 (NDK47_27390) - 5595613..5597550 (-) 1938 WP_251872867.1 DHH family phosphoesterase -
  NDK47_RS27395 (NDK47_27395) - 5597555..5598463 (-) 909 WP_251872868.1 DUF2232 domain-containing protein -
  NDK47_RS27400 (NDK47_27400) rpsR 5598575..5598805 (-) 231 WP_251872869.1 30S ribosomal protein S18 -
  NDK47_RS27405 (NDK47_27405) ssbA 5598862..5599320 (-) 459 WP_251872870.1 single-stranded DNA-binding protein Machinery gene
  NDK47_RS27410 (NDK47_27410) rpsF 5599351..5599638 (-) 288 WP_251872871.1 30S ribosomal protein S6 -
  NDK47_RS27415 (NDK47_27415) ychF 5599779..5600879 (-) 1101 WP_251872872.1 redox-regulated ATPase YchF -
  NDK47_RS27420 (NDK47_27420) - 5601288..5602034 (+) 747 WP_251872873.1 hypothetical protein -
  NDK47_RS27425 (NDK47_27425) pepF 5602139..5604049 (-) 1911 WP_322112108.1 oligoendopeptidase F -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 16500.48 Da        Isoelectric Point: 5.2853

>NTDB_id=697745 NDK47_RS27405 WP_251872870.1 5598862..5599320(-) (ssbA) [Brevibacillus ruminantium strain BB3-R1]
MNKVILIGNLTKDPELRYTPNGVAVTTFTLAINRPRANQAGEREADFINIVAWQKLADLCATYLRKGRQAAVEGRLQTRS
YDNKEGKKVYVTEVVAENVQFLGGKGGEGTGYDPGFGGSKPSGGQRDEMDAFGDPFANTGKPINISDDDLPF

Nucleotide


Download         Length: 459 bp        

>NTDB_id=697745 NDK47_RS27405 WP_251872870.1 5598862..5599320(-) (ssbA) [Brevibacillus ruminantium strain BB3-R1]
ATGAATAAAGTCATTCTCATCGGCAACCTGACGAAAGATCCGGAGCTTCGCTATACGCCAAATGGCGTGGCTGTTACCAC
TTTTACCTTGGCGATCAACCGTCCGCGTGCCAACCAGGCAGGCGAGCGAGAAGCCGATTTCATCAATATTGTCGCCTGGC
AAAAGCTTGCCGATCTGTGCGCTACCTATCTGCGCAAAGGCAGACAAGCTGCTGTCGAGGGCCGTTTGCAAACGCGCTCC
TATGACAATAAGGAAGGAAAAAAGGTATACGTGACGGAAGTTGTTGCGGAAAACGTTCAGTTTCTGGGCGGAAAAGGTGG
AGAAGGCACGGGCTATGATCCTGGCTTTGGCGGCAGCAAGCCGTCTGGCGGTCAGCGTGATGAGATGGATGCGTTTGGGG
ATCCCTTTGCGAATACGGGCAAGCCTATCAACATTTCGGATGATGACTTGCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

53.488

100

0.605
  ssb Latilactobacillus sakei subsp. sakei 23K

43.787

100

0.487
  ssb Neisseria gonorrhoeae MS11

35.465

100

0.401
  ssb Vibrio cholerae strain A1552

35.057

100

0.401
  ssb Neisseria meningitidis MC58

34.884

100

0.395
  ssbB Bacillus subtilis subsp. subtilis str. 168

52.778

71.053

0.375