Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   M5E07_RS01215 Genome accession   NZ_CP098732
Coordinates   263587..264330 (+) Length   247 a.a.
NCBI ID   WP_252221217.1    Uniprot ID   -
Organism   Acinetobacter tibetensis strain Y-23     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 258587..269330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5E07_RS01200 (M5E07_01200) ponA 259173..261698 (-) 2526 WP_252221213.1 penicillin-binding protein PBP1a -
  M5E07_RS01205 (M5E07_01205) pilM 261864..262922 (+) 1059 WP_116760958.1 pilus assembly protein PilM Machinery gene
  M5E07_RS01210 (M5E07_01210) pilN 262922..263590 (+) 669 WP_252221215.1 PilN domain-containing protein Machinery gene
  M5E07_RS01215 (M5E07_01215) comO 263587..264330 (+) 744 WP_252221217.1 type 4a pilus biogenesis protein PilO Machinery gene
  M5E07_RS01220 (M5E07_01220) pilP 264330..264857 (+) 528 WP_116760964.1 pilus assembly protein PilP Machinery gene
  M5E07_RS01225 (M5E07_01225) pilQ 264917..267031 (+) 2115 WP_252223640.1 type IV pilus secretin PilQ family protein Machinery gene
  M5E07_RS01230 (M5E07_01230) aroK 267069..267611 (+) 543 WP_116760968.1 shikimate kinase AroK -
  M5E07_RS01235 (M5E07_01235) aroB 267632..268714 (+) 1083 WP_252221219.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 27755.34 Da        Isoelectric Point: 4.8576

>NTDB_id=697458 M5E07_RS01215 WP_252221217.1 263587..264330(+) (comO) [Acinetobacter tibetensis strain Y-23]
MSRDEFDDLNQEAVVKPKKKMTVDKFFQQFNTLDPNNYGSWPLSVKITCWIFIVFLICAVGYFVVIKPQLDAISGAHAQE
QNLLNEFREKDSKLRNLQQYQAQLQEMEANFNQQLEQLPKETEIPGLVEDINVTGVNSGLKFKNIRLEPEVKQEFFVEQP
ISIEATGDYHAFGSFTSGIAALPRIVTLHDFDISSSISTDKKSEIPQVTYVAKARTYRYIGNTENQNAAAGANATTPPAQ
VTPEGAK

Nucleotide


Download         Length: 744 bp        

>NTDB_id=697458 M5E07_RS01215 WP_252221217.1 263587..264330(+) (comO) [Acinetobacter tibetensis strain Y-23]
ATGAGTCGTGATGAGTTTGATGATCTAAATCAAGAGGCTGTTGTTAAACCTAAGAAAAAAATGACAGTGGATAAATTTTT
TCAACAATTTAACACGTTGGACCCGAATAATTATGGCAGTTGGCCATTATCGGTCAAAATTACCTGTTGGATTTTTATTG
TCTTTTTAATTTGTGCTGTTGGCTATTTTGTTGTGATCAAGCCGCAGTTAGATGCAATTTCTGGTGCACATGCACAAGAG
CAAAACTTACTGAATGAATTTAGAGAGAAAGATTCAAAGCTACGTAATTTGCAACAATATCAAGCTCAGTTGCAGGAGAT
GGAAGCGAACTTTAATCAACAACTGGAGCAATTGCCGAAGGAAACTGAAATTCCTGGTCTGGTTGAAGATATTAACGTGA
CAGGTGTCAACTCTGGACTGAAATTTAAAAATATTCGTTTAGAGCCTGAAGTAAAACAAGAATTTTTTGTTGAGCAGCCG
ATTAGTATTGAAGCAACAGGTGATTATCATGCCTTTGGTTCTTTTACGAGTGGTATTGCAGCATTACCTCGAATTGTGAC
CTTACATGATTTTGATATCAGTTCTTCTATTAGTACGGATAAAAAATCTGAAATTCCGCAAGTGACTTATGTCGCGAAGG
CACGTACCTATCGCTATATAGGTAATACAGAGAATCAAAATGCGGCAGCAGGTGCGAATGCTACAACTCCTCCTGCTCAA
GTTACTCCAGAAGGAGCGAAGTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(75-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Acinetobacter baylyi ADP1

72.314

97.976

0.709
  pilO Acinetobacter baumannii D1279779

68.98

99.19

0.684