Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   M5E07_RS00805 Genome accession   NZ_CP098732
Coordinates   175839..176420 (+) Length   193 a.a.
NCBI ID   WP_116759084.1    Uniprot ID   A0A4R0DVP6
Organism   Acinetobacter tibetensis strain Y-23     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 170839..181420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5E07_RS00780 (M5E07_00780) - 170960..171766 (-) 807 WP_252221094.1 SDR family oxidoreductase -
  M5E07_RS00785 (M5E07_00785) - 171860..172231 (-) 372 WP_116759088.1 MerR family transcriptional regulator -
  M5E07_RS00790 (M5E07_00790) tenA 172301..172975 (-) 675 WP_252221096.1 thiaminase II -
  M5E07_RS00795 (M5E07_00795) - 173187..174272 (+) 1086 WP_116759086.1 DUF475 domain-containing protein -
  M5E07_RS00800 (M5E07_00800) - 174423..175787 (+) 1365 WP_116759085.1 MFS transporter -
  M5E07_RS00805 (M5E07_00805) ssb 175839..176420 (+) 582 WP_116759084.1 single-stranded DNA-binding protein Machinery gene
  M5E07_RS00810 (M5E07_00810) - 176972..178411 (+) 1440 WP_116759083.1 amino acid permease -
  M5E07_RS00815 (M5E07_00815) - 178479..179978 (-) 1500 WP_252221098.1 PLP-dependent aminotransferase family protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21278.93 Da        Isoelectric Point: 6.4819

>NTDB_id=697455 M5E07_RS00805 WP_116759084.1 175839..176420(+) (ssb) [Acinetobacter tibetensis strain Y-23]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSDSWTDKSTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDSNRQQGEGVPSDNAGFNQPRFNNNQNSGYGNNTGYNNNNNQGYGNTGGFNN
NPAGGNTQGGYSNTPKAAPSAPTPADLDDDLPF

Nucleotide


Download         Length: 582 bp        

>NTDB_id=697455 M5E07_RS00805 WP_116759084.1 175839..176420(+) (ssb) [Acinetobacter tibetensis strain Y-23]
ATGCGCGGTGTAAATAAAGTTATTTTAGTGGGCACATTAGGCCGAGATCCAGAGACGAAAACTTTTCCAAATGGGGGTTC
GTTGACTCAGTTTTCAATCGCAACTAGCGATTCTTGGACTGACAAAAGCACAGGTGAACGTAAAGAACAAACTGAATGGC
ACCGTATTGTGTTGCACAATCGTTTAGGTGAAATTGCTCAGCAATATTTACGTAAAGGTTCGAAGGTTTATATTGAAGGT
TCTTTGCGTACGCGCCAATGGACAGACCAAAATGGCCAAGAACGTTACACCACTGAAATTCGTGGTGAACAAATGCAAAT
GCTCGATTCAAACCGTCAGCAAGGTGAAGGTGTGCCGAGTGATAACGCAGGGTTTAACCAACCACGTTTTAACAATAACC
AAAACAGTGGTTATGGCAATAACACAGGTTATAACAACAATAACAACCAAGGTTATGGCAACACTGGCGGCTTTAATAAT
AATCCAGCAGGTGGCAATACCCAAGGTGGCTATAGCAATACACCTAAAGCAGCACCTTCTGCACCAACACCAGCAGATTT
GGATGACGATTTACCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4R0DVP6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.259

100

0.503
  ssb Vibrio cholerae strain A1552

43.367

100

0.44
  ssb Neisseria gonorrhoeae MS11

36.318

100

0.378
  ssb Neisseria meningitidis MC58

35.821

100

0.373