Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   M5E07_RS01210 Genome accession   NZ_CP098732
Coordinates   262922..263590 (+) Length   222 a.a.
NCBI ID   WP_252221215.1    Uniprot ID   A0AAE9LRZ6
Organism   Acinetobacter tibetensis strain Y-23     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 257922..268590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5E07_RS01195 (M5E07_01195) - 258313..259116 (+) 804 WP_252221211.1 putative RNA methyltransferase -
  M5E07_RS01200 (M5E07_01200) ponA 259173..261698 (-) 2526 WP_252221213.1 penicillin-binding protein PBP1a -
  M5E07_RS01205 (M5E07_01205) pilM 261864..262922 (+) 1059 WP_116760958.1 pilus assembly protein PilM Machinery gene
  M5E07_RS01210 (M5E07_01210) pilN 262922..263590 (+) 669 WP_252221215.1 PilN domain-containing protein Machinery gene
  M5E07_RS01215 (M5E07_01215) comO 263587..264330 (+) 744 WP_252221217.1 type 4a pilus biogenesis protein PilO Machinery gene
  M5E07_RS01220 (M5E07_01220) pilP 264330..264857 (+) 528 WP_116760964.1 pilus assembly protein PilP Machinery gene
  M5E07_RS01225 (M5E07_01225) pilQ 264917..267031 (+) 2115 WP_252223640.1 type IV pilus secretin PilQ family protein Machinery gene
  M5E07_RS01230 (M5E07_01230) aroK 267069..267611 (+) 543 WP_116760968.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 24583.05 Da        Isoelectric Point: 4.8210

>NTDB_id=697457 M5E07_RS01210 WP_252221215.1 262922..263590(+) (pilN) [Acinetobacter tibetensis strain Y-23]
MAKINLLPWRDELRERRKKEFIAICIGAALIGVLLVVGAWFYYNYKLEDQEQANQLIISTNQNLDVQLKSLEGLQEQRNA
IVERMKLIQGLQSQRPIAVRLIDEMARVVPANLYITKFSRVGDKFTIEGKAESPNAVAEFLRNLEASPWYRNAFMNSFLA
VEEDKNKAPSSIVPRVEDSYGSFVVTADLDEIAMPTNAANEAAGSMAVAANDAASSTAGAAQ

Nucleotide


Download         Length: 669 bp        

>NTDB_id=697457 M5E07_RS01210 WP_252221215.1 262922..263590(+) (pilN) [Acinetobacter tibetensis strain Y-23]
ATGGCAAAAATTAACCTGCTCCCTTGGCGTGATGAGCTGAGAGAGAGACGAAAAAAAGAATTTATTGCGATTTGTATTGG
GGCTGCTTTAATTGGAGTGTTATTGGTTGTAGGGGCATGGTTCTATTACAACTATAAGCTTGAAGACCAAGAACAAGCAA
ATCAGCTTATTATCAGTACCAATCAAAACTTGGATGTGCAGCTAAAATCTTTAGAAGGTTTGCAAGAGCAGCGTAATGCG
ATTGTAGAACGTATGAAGTTGATTCAAGGGCTGCAAAGTCAACGTCCAATTGCCGTGCGTTTAATTGATGAAATGGCGCG
TGTCGTCCCTGCGAATTTATATATTACCAAGTTCAGTCGTGTTGGCGATAAATTTACCATTGAAGGTAAGGCGGAAAGTC
CAAATGCAGTGGCTGAATTTTTACGTAATTTAGAGGCTTCGCCTTGGTATCGTAATGCCTTTATGAATTCCTTCTTGGCT
GTGGAAGAAGATAAAAATAAAGCGCCGAGTTCGATTGTTCCTCGTGTTGAGGATAGTTATGGCAGCTTTGTGGTGACTGC
AGATCTGGATGAGATCGCTATGCCTACGAATGCAGCGAATGAAGCTGCGGGTTCTATGGCGGTAGCGGCAAATGATGCAG
CTAGTTCAACAGCGGGGGCAGCACAATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-166)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

69.811

95.495

0.667
  comN Acinetobacter baylyi ADP1

71.503

86.937

0.622