Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   M5E07_RS01225 Genome accession   NZ_CP098732
Coordinates   264917..267031 (+) Length   704 a.a.
NCBI ID   WP_252223640.1    Uniprot ID   -
Organism   Acinetobacter tibetensis strain Y-23     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 259917..272031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5E07_RS01205 (M5E07_01205) pilM 261864..262922 (+) 1059 WP_116760958.1 pilus assembly protein PilM Machinery gene
  M5E07_RS01210 (M5E07_01210) pilN 262922..263590 (+) 669 WP_252221215.1 PilN domain-containing protein Machinery gene
  M5E07_RS01215 (M5E07_01215) comO 263587..264330 (+) 744 WP_252221217.1 type 4a pilus biogenesis protein PilO Machinery gene
  M5E07_RS01220 (M5E07_01220) pilP 264330..264857 (+) 528 WP_116760964.1 pilus assembly protein PilP Machinery gene
  M5E07_RS01225 (M5E07_01225) pilQ 264917..267031 (+) 2115 WP_252223640.1 type IV pilus secretin PilQ family protein Machinery gene
  M5E07_RS01230 (M5E07_01230) aroK 267069..267611 (+) 543 WP_116760968.1 shikimate kinase AroK -
  M5E07_RS01235 (M5E07_01235) aroB 267632..268714 (+) 1083 WP_252221219.1 3-dehydroquinate synthase -
  M5E07_RS01240 (M5E07_01240) - 268725..269597 (+) 873 WP_252221221.1 hypothetical protein -

Sequence

Protein


Download         Length: 704 a.a.        Molecular weight: 76218.31 Da        Isoelectric Point: 5.1488

>NTDB_id=697460 M5E07_RS01225 WP_252223640.1 264917..267031(+) (pilQ) [Acinetobacter tibetensis strain Y-23]
MNHIFRQFSMGAVAMAVMQAASAQVSITNVVPMQVPGQGTEIRVMFNGIPPQPQAYQLEQPSRLILDFDKAEQTLKQNNI
KVATKEASSVDVSSDAQRSRLTVNLADAGAFTTRVEGNTFILKINATDNSFATPVATSVKASSQGVSNIGFQRGSEGEGQ
VVIDLLGSNTPADVQQQGSKIVVRMLGNKIPTHLTRRLNVNDFATPVATIDAYNDGNSGVITIQSSGSYEYMAYQAENKL
TISLKRPVDKNPMKPRAANSYTGKKISLDFQDIEVRRVLQLLADFTGINMVAADTVQGNITLRLKDVPWDQALDIILKTK
NLDKRRNGNVIWIAPVAELIKSEEDEAKAIAQSAKLAPIQTEYLRLSYAKAADVFKLITDSRKEASGSGGGNNQNSLALE
SLLSTRGSVVSDDRTNTLIINDTALNIDKIRKMVDLLDVEVKQVMVEARIVRASTSFTKEMGVKWGILSQGVNSNNDLLV
GGSDQTLWDLKTPDDEGKYTIQRPDNLNVDLGVTNPAGQIAFSLISLSDFMLDLELSALQADGYGEVISTPKVLTGDKQK
AKVATGQEVPYQTTTNSASGSTATTSFKEALLSLEVTPSITPDGKVQMQLDIAKDSVADEAPNGELILNKNTITTNVLVN
NGETVILGGVFEQTTTNSQTKVPFLGDIPYIGALFRKDTKSDAKQELLIFVTPRIVNDSVSRNH

Nucleotide


Download         Length: 2115 bp        

>NTDB_id=697460 M5E07_RS01225 WP_252223640.1 264917..267031(+) (pilQ) [Acinetobacter tibetensis strain Y-23]
ATGAATCATATTTTCCGTCAATTCTCTATGGGTGCAGTTGCTATGGCTGTCATGCAAGCTGCCAGTGCGCAAGTTAGCAT
CACGAATGTTGTACCTATGCAAGTACCTGGACAAGGGACTGAAATTCGTGTGATGTTCAACGGAATACCACCACAACCTC
AAGCTTACCAACTTGAACAGCCATCAAGACTTATTTTAGATTTTGATAAGGCAGAACAAACACTAAAGCAAAATAATATT
AAGGTTGCGACAAAAGAAGCCAGTTCGGTTGATGTATCCTCAGATGCACAGCGTTCTCGATTGACCGTTAATCTTGCGGA
TGCAGGCGCTTTTACCACCCGAGTTGAAGGTAATACCTTTATTCTGAAAATAAATGCGACAGATAATAGTTTTGCGACTC
CTGTGGCAACATCAGTTAAAGCGTCATCGCAAGGTGTTTCTAATATCGGTTTTCAACGCGGTTCAGAGGGTGAAGGTCAG
GTTGTTATTGATTTGCTCGGTAGTAATACGCCAGCAGATGTACAGCAACAAGGTAGTAAAATTGTGGTGCGCATGTTGGG
AAATAAAATCCCTACACATCTGACTCGCCGTCTCAATGTCAATGATTTTGCAACGCCTGTGGCGACCATAGATGCTTATA
ATGATGGCAATAGTGGTGTGATTACTATTCAGTCTTCAGGCAGCTATGAATACATGGCTTACCAAGCTGAGAATAAGTTA
ACGATCAGCTTAAAGCGTCCTGTGGATAAGAATCCAATGAAGCCGCGTGCGGCAAATAGTTATACGGGCAAGAAAATTTC
ACTGGATTTCCAAGATATTGAAGTACGCCGCGTATTACAATTATTGGCAGATTTTACTGGCATTAACATGGTGGCTGCCG
ATACGGTACAAGGCAATATCACCTTGCGCTTAAAAGATGTGCCATGGGATCAAGCGCTTGATATTATTTTAAAAACAAAA
AATTTAGACAAGCGTCGTAATGGTAATGTGATTTGGATTGCACCAGTCGCTGAATTGATTAAGTCTGAAGAAGACGAAGC
CAAAGCGATAGCGCAGAGTGCAAAATTAGCCCCAATTCAAACTGAATATTTGCGTTTAAGTTATGCAAAAGCTGCGGATG
TTTTTAAGCTAATTACTGATTCACGTAAGGAGGCTAGTGGTTCAGGAGGGGGAAATAACCAGAATTCTTTAGCATTAGAA
AGTTTATTAAGCACAAGAGGGAGTGTAGTTTCAGATGATCGTACGAATACTTTAATTATTAATGATACAGCGCTAAATAT
TGATAAAATTAGAAAAATGGTCGATTTATTGGATGTTGAAGTCAAGCAAGTCATGGTCGAGGCGCGAATTGTTCGAGCAT
CAACTTCGTTCACCAAAGAGATGGGGGTGAAGTGGGGGATTCTTTCACAAGGGGTTAATAGCAATAATGATCTCTTGGTG
GGCGGGAGTGATCAAACTTTATGGGATTTAAAAACCCCTGATGATGAGGGGAAATACACCATTCAGCGTCCAGACAACTT
AAACGTAGATTTGGGAGTGACCAATCCTGCAGGTCAAATTGCCTTTAGCTTGATTAGTTTGTCTGACTTTATGTTGGATT
TAGAACTCTCTGCTTTACAGGCAGATGGCTATGGTGAGGTGATTTCAACACCAAAAGTCTTGACTGGAGATAAGCAAAAG
GCCAAGGTGGCTACAGGTCAAGAAGTACCTTATCAAACTACGACCAACTCTGCTTCAGGCTCAACAGCAACAACCTCATT
TAAAGAGGCTTTACTCAGTTTGGAAGTCACGCCAAGTATTACCCCAGATGGTAAAGTACAAATGCAGCTTGATATTGCGA
AAGACTCGGTTGCGGATGAAGCACCGAATGGTGAGTTGATCTTAAACAAAAACACAATTACGACCAATGTCTTGGTCAAC
AATGGTGAAACAGTGATTTTAGGTGGTGTGTTTGAGCAGACGACCACGAATTCACAAACCAAGGTACCGTTCTTGGGGGA
TATTCCTTATATTGGTGCATTATTCAGGAAGGATACCAAGTCGGATGCTAAGCAAGAGCTATTGATTTTTGTGACGCCAC
GAATTGTTAATGACAGTGTTTCAAGAAATCATTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(362-443)

AMIN domain (AMIN)

(41-120)

Bacterial type II and III secretion system protein (Secretin)

(538-696)

Secretin and TonB N terminus short domain (STN)

(293-335)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

77.092

100

0.798
  pilQ Acinetobacter baumannii strain A118

76.955

100

0.797
  comQ Acinetobacter baylyi ADP1

75.14

100

0.76
  pilQ Pseudomonas aeruginosa PAK

40.225

100

0.406
  pilQ Legionella pneumophila strain Lp02

36.984

99.858

0.369
  pilQ Legionella pneumophila strain ERS1305867

37.016

99.006

0.366