Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   NDL73_RS08635 Genome accession   NZ_CP098503
Coordinates   1637911..1638417 (-) Length   168 a.a.
NCBI ID   WP_260253272.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10268     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1632911..1643417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDL73_RS08615 (NDL73_10995) msrAB 1633405..1634973 (-) 1569 WP_003694393.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -
  NDL73_RS08620 (NDL73_11000) pilA 1635119..1636372 (+) 1254 WP_003687004.1 signal recognition particle-docking protein FtsY Machinery gene
  NDL73_RS08625 (NDL73_11005) - 1636450..1636623 (-) 174 WP_167550559.1 hypothetical protein -
  NDL73_RS08630 (NDL73_11010) - 1636637..1637341 (-) 705 WP_260253279.1 opacity family porin -
  NDL73_RS08635 (NDL73_11020) pilE 1637911..1638417 (-) 507 WP_260253272.1 pilin Machinery gene
  NDL73_RS08640 (NDL73_11025) - 1638786..1638929 (-) 144 WP_012503975.1 hypothetical protein -
  NDL73_RS08645 (NDL73_11030) - 1639034..1639114 (-) 81 Protein_1661 pilin -
  NDL73_RS08650 (NDL73_11035) - 1639232..1639636 (-) 405 Protein_1662 pilin -
  NDL73_RS08655 (NDL73_11040) - 1640173..1640589 (-) 417 Protein_1663 pilin -
  NDL73_RS08660 (NDL73_11045) lpxC 1640689..1641612 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  NDL73_RS11820 - 1642104..1642826 (-) 723 WP_374110874.1 pilin -
  NDL73_RS08680 (NDL73_11065) - 1642852..1643067 (-) 216 Protein_1666 pilin -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 17976.56 Da        Isoelectric Point: 8.9678

>NTDB_id=696385 NDL73_RS08635 WP_260253272.1 1637911..1638417(-) (pilE) [Neisseria gonorrhoeae strain 10268]
MNTLQKGFTLIELMIVIAIVGILAAVALPAYQDYTARAQVSEAILLAEGQKSAVTEYYLNHGIWPKDNTSAGVASPASNI
KGKYVKEVKVENGVVTATMASSNVNKEIKGKKLSLWARREAGSVKWFCGQPVQRADNADNDAVTAAAAGKDTTNIDTKHL
PSTCRDLP

Nucleotide


Download         Length: 507 bp        

>NTDB_id=696385 NDL73_RS08635 WP_260253272.1 1637911..1638417(-) (pilE) [Neisseria gonorrhoeae strain 10268]
ATGAATACCCTTCAAAAAGGCTTTACCCTTATCGAGCTGATGATTGTGATCGCCATCGTCGGCATTTTGGCGGCAGTCGC
CCTTCCCGCCTACCAAGACTACACCGCCCGCGCGCAAGTTTCCGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCG
TCACCGAGTATTACCTGAATCACGGCATATGGCCGAAAGACAACACTTCTGCCGGCGTGGCATCCCCCGCCTCCAACATC
AAAGGCAAATATGTTAAGGAAGTTAAAGTCGAAAACGGCGTCGTTACCGCCACAATGGCTTCAAGCAACGTAAACAAAGA
AATCAAAGGCAAAAAACTCTCCCTGTGGGCCAGGCGTGAAGCCGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTCAGC
GCGCCGACAACGCCGACAACGACGCCGTCACCGCCGCCGCCGCCGGCAAAGACACCACCAACATCGACACCAAGCACCTG
CCGTCAACCTGCCGCGACCTGCCGTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(36-165)

Prokaryotic N-terminal methylation motif (N_methyl)

(5-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

83.735

98.81

0.827
  pilE Neisseria gonorrhoeae strain FA1090

81.325

98.81

0.804
  comP Acinetobacter baylyi ADP1

39.884

100

0.411
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

35.025

100

0.411
  pilA/pilA1 Eikenella corrodens VA1

35.955

100

0.381
  pilA Ralstonia pseudosolanacearum GMI1000

35.882

100

0.363