Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   NC854_RS11085 Genome accession   NZ_CP098470
Coordinates   2101274..2101777 (-) Length   167 a.a.
NCBI ID   WP_260247677.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10792     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2096274..2106777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NC854_RS11065 (NC854_10945) msrAB 2096599..2098167 (-) 1569 WP_003694393.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -
  NC854_RS11070 (NC854_10950) pilA 2098313..2099566 (+) 1254 WP_003687004.1 signal recognition particle-docking protein FtsY Machinery gene
  NC854_RS11075 (NC854_10955) - 2100017..2100892 (-) 876 Protein_2135 opacity family porin -
  NC854_RS11085 (NC854_10965) pilE 2101274..2101777 (-) 504 WP_260247677.1 pilin Machinery gene
  NC854_RS11090 (NC854_10970) - 2102144..2102607 (-) 464 Protein_2137 pilin -
  NC854_RS11095 (NC854_10975) pilE 2103144..2103557 (-) 414 WP_229931388.1 pilin Machinery gene
  NC854_RS11100 (NC854_10980) lpxC 2103663..2104586 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  NC854_RS11110 (NC854_10990) - 2105078..2105434 (-) 357 Protein_2140 pilin -
  NC854_RS11115 (NC854_10995) - 2105475..2105690 (-) 216 Protein_2141 pilin -
  NC854_RS11120 (NC854_11000) - 2106063..2106194 (-) 132 WP_010356054.1 hypothetical protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18240.68 Da        Isoelectric Point: 6.9569

>NTDB_id=695953 NC854_RS11085 WP_260247677.1 2101274..2101777(-) (pilE) [Neisseria gonorrhoeae strain 10792]
MNTLQKGFTLIELMIVIAIVGILAAVALPAYQDYTARAQVSEAILLAEGQKSAVTEYYLNNGEWPENNDSAGVASSSSIK
GKYVKEVEVKNGVVTAQMKSDGVNKEIKGKRLSLWARREAGSVKWFCGQPVKRDDKDNDTVADAADDKNKIETKHLPSTC
RDTSMTN

Nucleotide


Download         Length: 504 bp        

>NTDB_id=695953 NC854_RS11085 WP_260247677.1 2101274..2101777(-) (pilE) [Neisseria gonorrhoeae strain 10792]
ATGAATACCCTTCAAAAAGGCTTTACCCTTATCGAGCTGATGATTGTGATCGCCATCGTCGGCATTTTGGCGGCAGTCGC
CCTTCCCGCCTACCAAGACTACACCGCCCGCGCGCAAGTTTCCGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCG
TTACCGAGTATTACCTGAATAACGGCGAATGGCCGGAAAACAACGACTCTGCCGGCGTGGCATCTTCTTCATCAATCAAA
GGCAAATATGTTAAGGAAGTTGAAGTCAAAAACGGCGTCGTTACCGCCCAAATGAAATCAGACGGCGTAAACAAAGAAAT
CAAAGGCAAAAGACTCTCCCTGTGGGCCAGGCGTGAAGCCGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTAAGCGCG
ACGACAAAGACAACGACACCGTTGCCGACGCCGCCGACGACAAAAACAAAATCGAAACCAAGCACCTGCCGTCAACCTGC
CGCGATACGTCAATGACAAATTAG

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(36-161)

Prokaryotic N-terminal methylation motif (N_methyl)

(5-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

85.276

97.605

0.832
  pilE Neisseria gonorrhoeae strain FA1090

80.488

98.204

0.79
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

34.211

100

0.389
  pilA/pilA1 Eikenella corrodens VA1

36.628

100

0.377
  comP Acinetobacter baylyi ADP1

36.97

98.802

0.365