Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   NC854_RS11095 Genome accession   NZ_CP098470
Coordinates   2103144..2103557 (-) Length   137 a.a.
NCBI ID   WP_229931388.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10792     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2098144..2108557
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NC854_RS11070 (NC854_10950) pilA 2098313..2099566 (+) 1254 WP_003687004.1 signal recognition particle-docking protein FtsY Machinery gene
  NC854_RS11075 (NC854_10955) - 2100017..2100892 (-) 876 Protein_2135 opacity family porin -
  NC854_RS11085 (NC854_10965) pilE 2101274..2101777 (-) 504 WP_260247677.1 pilin Machinery gene
  NC854_RS11090 (NC854_10970) - 2102144..2102607 (-) 464 Protein_2137 pilin -
  NC854_RS11095 (NC854_10975) pilE 2103144..2103557 (-) 414 WP_229931388.1 pilin Machinery gene
  NC854_RS11100 (NC854_10980) lpxC 2103663..2104586 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  NC854_RS11110 (NC854_10990) - 2105078..2105434 (-) 357 Protein_2140 pilin -
  NC854_RS11115 (NC854_10995) - 2105475..2105690 (-) 216 Protein_2141 pilin -
  NC854_RS11120 (NC854_11000) - 2106063..2106194 (-) 132 WP_010356054.1 hypothetical protein -
  NC854_RS11125 (NC854_11005) - 2106276..2106964 (-) 689 Protein_2143 SprT family zinc-dependent metalloprotease -
  NC854_RS11130 (NC854_11010) - 2106961..2107704 (-) 744 WP_003687014.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  NC854_RS11135 (NC854_11015) gmhB 2107734..2108297 (-) 564 WP_003687015.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 14961.72 Da        Isoelectric Point: 7.1351

>NTDB_id=695954 NC854_RS11095 WP_229931388.1 2103144..2103557(-) (pilE) [Neisseria gonorrhoeae strain 10792]
MPTDPDSRLRGNDEAILLAEGQKSAVTEYYLNHGKWPEDNDKAGVASPDKIIGKYVKQVEVKNGVVTAEMASTGVNKEIQ
GKKLSLWAKRENGSVKWFCGQPVTRNAKDNDTVANDATNAIETKHLPSTCRDPFSAS

Nucleotide


Download         Length: 414 bp        

>NTDB_id=695954 NC854_RS11095 WP_229931388.1 2103144..2103557(-) (pilE) [Neisseria gonorrhoeae strain 10792]
GTGCCGACAGACCCGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTTAC
CGAGTATTACCTGAATCACGGCAAATGGCCGGAAGACAACGACAAGGCCGGCGTGGCATCCCCCGACAAAATCATAGGCA
AATATGTTAAGCAAGTTGAAGTCAAAAACGGCGTCGTCACCGCCGAAATGGCTTCAACCGGCGTAAACAAAGAAATCCAA
GGCAAAAAACTCTCCCTGTGGGCCAAGCGTGAAAACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCGCAACGC
CAAAGACAACGACACCGTTGCCAACGACGCCACCAACGCCATCGAAACCAAGCACCTGCCGTCAACCTGCCGCGACCCGT
TCTCTGCTAGCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

72.464

100

0.73
  pilE Neisseria gonorrhoeae MS11

71.942

100

0.73