Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   NC846_RS11080 Genome accession   NZ_CP098458
Coordinates   2106867..2107361 (-) Length   164 a.a.
NCBI ID   WP_263852720.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10588     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2101867..2112361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NC846_RS11065 (NC846_10975) msrAB 2102403..2103971 (-) 1569 WP_003694393.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -
  NC846_RS11070 (NC846_10980) pilA 2104117..2105370 (+) 1254 WP_003687004.1 signal recognition particle-docking protein FtsY Machinery gene
  NC846_RS11075 (NC846_10985) - 2105641..2106351 (-) 711 WP_263852719.1 opacity family porin -
  NC846_RS11080 (NC846_10990) pilE 2106867..2107361 (-) 495 WP_263852720.1 pilin Machinery gene
  NC846_RS11085 (NC846_10995) - 2108159..2108503 (-) 345 Protein_2142 pilin -
  NC846_RS11090 (NC846_11000) - 2108485..2108889 (-) 405 Protein_2143 pilin -
  NC846_RS11095 (NC846_11005) pilE 2109426..2109839 (-) 414 WP_263852721.1 pilin Machinery gene
  NC846_RS11100 (NC846_11010) lpxC 2109945..2110868 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  NC846_RS11110 (NC846_11020) - 2111392..2111709 (-) 318 Protein_2146 pilin -
  NC846_RS11115 (NC846_11025) - 2111728..2112075 (-) 348 Protein_2147 pilin -
  NC846_RS11120 (NC846_11030) - 2112116..2112331 (-) 216 Protein_2148 pilin -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17629.23 Da        Isoelectric Point: 10.1041

>NTDB_id=695658 NC846_RS11080 WP_263852720.1 2106867..2107361(-) (pilE) [Neisseria gonorrhoeae strain 10588]
MNTLQKGFTLIELMIVIAIVGILAAVALPAYQDYTARAQVSEAILLAEGQKSAVTEYYLNNGEWPKDNGDAGVASASEIK
GKYVQKVEVNNGVVTATMASSNVNKEIKDKRLSLWAKRQDGSVKWFCGQPVKRAAAGTTTTPSPKTTPTKSKPSTCRQPA
AIRQ

Nucleotide


Download         Length: 495 bp        

>NTDB_id=695658 NC846_RS11080 WP_263852720.1 2106867..2107361(-) (pilE) [Neisseria gonorrhoeae strain 10588]
ATGAATACCCTTCAAAAAGGCTTTACCCTTATCGAGCTGATGATTGTGATCGCCATCGTCGGCATTTTGGCGGCAGTCGC
CCTTCCCGCCTACCAAGACTACACCGCCCGCGCGCAAGTTTCCGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCG
TTACCGAGTATTACCTGAATAACGGCGAATGGCCCAAAGACAACGGCGATGCCGGCGTGGCATCCGCTTCAGAAATCAAA
GGCAAATATGTTCAGAAAGTTGAAGTCAACAACGGCGTCGTTACCGCCACAATGGCTTCAAGCAACGTAAACAAAGAAAT
CAAAGACAAAAGACTCTCCCTGTGGGCCAAGCGTCAAGACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTAAGCGCG
CCGCCGCCGGAACGACGACGACGCCGTCGCCAAAGACGACACCAACAAAATCGAAACCAAGCACCTGCCGTCAACCTGCC
GCGATACGTCAATGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(36-157)

Prokaryotic N-terminal methylation motif (N_methyl)

(5-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

79.012

98.78

0.78
  pilE Neisseria gonorrhoeae MS11

74.847

99.39

0.744
  comP Acinetobacter baylyi ADP1

40.244

100

0.402
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

34.375

100

0.402
  pilA2 Legionella pneumophila strain ERS1305867

38.71

94.512

0.366