Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   NC846_RS11095 Genome accession   NZ_CP098458
Coordinates   2109426..2109839 (-) Length   137 a.a.
NCBI ID   WP_263852721.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10588     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2104426..2114839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NC846_RS11075 (NC846_10985) - 2105641..2106351 (-) 711 WP_263852719.1 opacity family porin -
  NC846_RS11080 (NC846_10990) pilE 2106867..2107361 (-) 495 WP_263852720.1 pilin Machinery gene
  NC846_RS11085 (NC846_10995) - 2108159..2108503 (-) 345 Protein_2142 pilin -
  NC846_RS11090 (NC846_11000) - 2108485..2108889 (-) 405 Protein_2143 pilin -
  NC846_RS11095 (NC846_11005) pilE 2109426..2109839 (-) 414 WP_263852721.1 pilin Machinery gene
  NC846_RS11100 (NC846_11010) lpxC 2109945..2110868 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  NC846_RS11110 (NC846_11020) - 2111392..2111709 (-) 318 Protein_2146 pilin -
  NC846_RS11115 (NC846_11025) - 2111728..2112075 (-) 348 Protein_2147 pilin -
  NC846_RS11120 (NC846_11030) - 2112116..2112331 (-) 216 Protein_2148 pilin -
  NC846_RS11125 (NC846_11035) - 2112704..2112835 (-) 132 WP_010356054.1 hypothetical protein -
  NC846_RS11130 (NC846_11040) - 2112917..2113605 (-) 689 Protein_2150 SprT family zinc-dependent metalloprotease -
  NC846_RS11135 (NC846_11045) - 2113602..2114345 (-) 744 WP_003687014.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 14856.54 Da        Isoelectric Point: 5.9288

>NTDB_id=695659 NC846_RS11095 WP_263852721.1 2109426..2109839(-) (pilE) [Neisseria gonorrhoeae strain 10588]
MPTDPDSRLRGNDEAILLAEGQKSAVTEYYLNNGEWPKDNGDAGVASASEIKGKYVKEVKVENGVVTAEMASTGVNKEIQ
DKRLSLWAKRQAGSVKWFCGQPVKRAAKDNDTVANDATNAIETKHLPSTCRDPFSAS

Nucleotide


Download         Length: 414 bp        

>NTDB_id=695659 NC846_RS11095 WP_263852721.1 2109426..2109839(-) (pilE) [Neisseria gonorrhoeae strain 10588]
GTGCCGACAGACCCGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTTAC
CGAGTATTACCTGAATAACGGCGAATGGCCCAAAGACAACGGCGATGCCGGCGTGGCATCCGCTTCAGAAATCAAAGGCA
AATATGTTAAGGAAGTTAAAGTCGAAAACGGCGTCGTCACCGCCGAAATGGCTTCAACCGGCGTAAACAAAGAAATCCAA
GACAAAAGACTCTCCCTGTGGGCCAAGCGTCAAGCCGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTAAGCGCGCCGC
CAAAGACAACGACACCGTTGCCAACGACGCCACCAACGCCATCGAAACCAAGCACCTGCCGTCAACCTGCCGCGACCCGT
TCTCTGCTAGCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

73.913

100

0.745
  pilE Neisseria gonorrhoeae MS11

66.187

100

0.672