Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   SR187_RS10200 Genome accession   NZ_AP018400
Coordinates   951036..951326 (+) Length   96 a.a.
NCBI ID   WP_269460240.1    Uniprot ID   -
Organism   Streptococcus ruminantium strain GUT-187     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 946036..956326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SR187_RS04610 (SR187_4720) - 946813..946971 (+) 159 Protein_850 putative cross-wall-targeting lipoprotein signal domain-containing proteiin -
  SR187_RS10050 (SR187_4725) - 947132..947560 (+) 429 WP_231996451.1 glycosyltransferase -
  SR187_RS10185 - 947586..947642 (+) 57 Protein_852 hypothetical protein -
  SR187_RS04620 - 948824..949015 (+) 192 WP_105141509.1 hypothetical protein -
  SR187_RS10190 (SR187_4730) comA 949218..949562 (+) 345 WP_269460238.1 cysteine peptidase family C39 domain-containing protein Regulator
  SR187_RS10195 (SR187_4740) comA 950202..950315 (+) 114 WP_407697564.1 hypothetical protein Regulator
  SR187_RS10200 (SR187_4745) comA 951036..951326 (+) 291 WP_269460240.1 ATP-binding cassette domain-containing protein Regulator
  SR187_RS04630 (SR187_4750) - 951348..951503 (+) 156 WP_120171658.1 bacteriocin-type signal sequence -
  SR187_RS04635 (SR187_4755) - 951944..952792 (+) 849 WP_231996452.1 GHKL domain-containing protein -
  SR187_RS10055 (SR187_4760) - 952807..953049 (+) 243 WP_231996453.1 hypothetical protein -
  SR187_RS04645 (SR187_4765) - 954114..954749 (+) 636 WP_120171659.1 hypothetical protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10749.44 Da        Isoelectric Point: 5.0495

>NTDB_id=69472 SR187_RS10200 WP_269460240.1 951036..951326(+) (comA) [Streptococcus ruminantium strain GUT-187]
MSGGQLQRVAIARALLTNPSVLILDESTSNLDNLTERKIIDNLMSLDATVIFIAHRLNITEQVERIFVIENGMIIENGNH
EDLILKQGFYSKILKG

Nucleotide


Download         Length: 291 bp        

>NTDB_id=69472 SR187_RS10200 WP_269460240.1 951036..951326(+) (comA) [Streptococcus ruminantium strain GUT-187]
TTGTCAGGAGGTCAACTTCAGAGAGTTGCCATTGCACGTGCATTATTAACCAATCCTTCGGTATTAATCTTAGATGAGTC
AACAAGTAATTTGGATAATTTAACGGAAAGAAAAATTATTGATAATTTAATGAGCTTAGATGCAACTGTAATATTTATTG
CTCACCGTCTTAATATAACAGAACAGGTTGAAAGGATATTTGTCATAGAAAATGGTATGATAATCGAAAACGGAAATCAT
GAAGATTTGATATTAAAACAAGGGTTTTATTCTAAAATATTAAAAGGTTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(1-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis NCTC 12261

59.574

97.917

0.583
  comA Streptococcus gordonii str. Challis substr. CH1

59.574

97.917

0.583
  comA Streptococcus mitis SK321

57.447

97.917

0.563
  comA Streptococcus pneumoniae TIGR4

57.447

97.917

0.563
  comA Streptococcus pneumoniae Rx1

57.447

97.917

0.563
  comA Streptococcus pneumoniae D39

57.447

97.917

0.563
  comA Streptococcus pneumoniae R6

57.447

97.917

0.563
  comA/nlmT Streptococcus mutans UA159

56.044

94.792

0.531
  rcrQ Streptococcus mutans UA159

42.708

100

0.427
  amiE Streptococcus salivarius strain HSISS4

41.379

90.625

0.375
  amiE Streptococcus thermophilus LMG 18311

41.379

90.625

0.375
  amiE Streptococcus thermophilus LMD-9

41.379

90.625

0.375
  amiF Streptococcus thermophilus LMG 18311

40.449

92.708

0.375
  amiF Streptococcus thermophilus LMD-9

40.449

92.708

0.375
  amiF Streptococcus salivarius strain HSISS4

40.449

92.708

0.375

Multiple sequence alignment