Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   SR187_RS09825 Genome accession   NZ_AP018400
Coordinates   2088208..2089383 (+) Length   391 a.a.
NCBI ID   WP_120172442.1    Uniprot ID   A0A2Z5TTG3
Organism   Streptococcus ruminantium strain GUT-187     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 2083208..2094383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SR187_RS09795 (SR187_10110) - 2083838..2086414 (+) 2577 WP_120172441.1 YfhO family protein -
  SR187_RS09815 (SR187_10130) - 2086828..2087512 (-) 685 Protein_1875 YoaK family protein -
  SR187_RS09820 (SR187_10135) rlmH 2087537..2088016 (-) 480 WP_024531474.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  SR187_RS09825 (SR187_10140) htrA 2088208..2089383 (+) 1176 WP_120172442.1 S1C family serine protease Regulator
  SR187_RS09830 (SR187_10145) spo0J 2089444..2090241 (+) 798 WP_120172443.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 391 a.a.        Molecular weight: 41593.05 Da        Isoelectric Point: 8.9096

>NTDB_id=69468 SR187_RS09825 WP_120172442.1 2088208..2089383(+) (htrA) [Streptococcus ruminantium strain GUT-187]
MKKYLKFTILFAVGLLGGLVGSFMTASFFQPQAQQQANSTITNVSKVQYNNETSTTKAVEKVQNAVVSVINYQKSANNSL
RSIFGNIDTPDEPVVAGEGSGVIYKKDDKYAYVVTNTHVINNAEKIDILLTSGEKVRGELVGSDTYSDIAVIRIPADKVT
TVAEFANSNTIKVGEPAIAIGSPLGSVYANTVTQGIISSLSRTITSQSEDGQTISTNAIQTDAAINPGNSGGPLINIKGQ
VVGINSSKKSTSRSGVAIEGMGFAIPANDVVAIINQIEKNGKVIRPALGFQLVNLTDLSTGQLEKAGLSDTKLTSGVVVV
STQKGLPADGKLETFDVITEINGEAVQNKSDLQSILYKHKIGDTIKVTYYRNNKKQTVDIKLTHSTEQLSQ

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=69468 SR187_RS09825 WP_120172442.1 2088208..2089383(+) (htrA) [Streptococcus ruminantium strain GUT-187]
ATGAAAAAATATTTGAAATTTACTATTCTGTTTGCTGTTGGTCTTTTGGGTGGTTTAGTTGGTTCTTTCATGACTGCCTC
TTTCTTTCAACCACAAGCACAACAACAGGCAAATTCTACTATTACAAATGTCAGCAAGGTGCAATACAATAATGAGACCT
CTACTACAAAAGCAGTAGAAAAGGTGCAAAATGCTGTTGTTTCAGTAATTAACTATCAAAAATCAGCAAACAATAGCCTA
CGCTCCATCTTCGGAAATATTGATACACCGGATGAACCTGTAGTAGCTGGAGAAGGTTCGGGTGTTATCTATAAAAAAGA
CGATAAATATGCCTACGTTGTTACCAATACGCATGTTATCAATAACGCAGAAAAAATAGATATTCTTCTAACTTCAGGAG
AAAAGGTCAGAGGAGAACTTGTTGGTTCTGACACTTATTCTGACATAGCTGTAATAAGGATTCCTGCTGATAAGGTCACT
ACTGTTGCCGAATTTGCTAACTCCAATACTATCAAGGTCGGTGAACCTGCTATCGCTATCGGTAGCCCACTTGGTAGTGT
CTATGCTAATACTGTTACACAAGGTATTATTTCTAGTTTGAGTAGAACTATCACCTCACAATCAGAAGATGGACAAACTA
TCTCTACCAACGCTATCCAAACAGATGCAGCCATTAACCCAGGTAATTCAGGTGGTCCACTGATAAATATTAAAGGACAA
GTTGTGGGGATCAATTCAAGTAAAAAGAGTACATCGAGATCCGGTGTTGCTATAGAAGGGATGGGCTTTGCTATTCCTGC
TAATGATGTAGTAGCTATTATCAATCAAATTGAGAAAAATGGTAAAGTTATCCGACCTGCTCTCGGTTTCCAACTAGTCA
ATTTGACAGATTTGTCAACTGGACAATTAGAAAAAGCTGGATTATCAGATACCAAATTAACATCTGGTGTTGTAGTTGTT
TCAACGCAGAAGGGGTTACCTGCTGATGGAAAACTTGAAACCTTTGATGTTATCACTGAGATTAACGGTGAAGCTGTTCA
AAATAAGAGCGATCTTCAAAGTATCCTCTACAAGCATAAAATTGGTGATACGATTAAGGTTACCTACTATCGTAACAATA
AAAAGCAAACAGTTGACATCAAGTTGACACATTCTACGGAGCAACTCAGTCAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A2Z5TTG3

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

59.494

100

0.601

  htrA Streptococcus gordonii str. Challis substr. CH1

59.184

100

0.593

  htrA Streptococcus pneumoniae Rx1

55.784

99.488

0.555

  htrA Streptococcus pneumoniae D39

55.784

99.488

0.555

  htrA Streptococcus pneumoniae R6

55.784

99.488

0.555

  htrA Streptococcus pneumoniae TIGR4

55.784

99.488

0.555

  htrA Streptococcus mitis NCTC 12261

55.784

99.488

0.555


Multiple sequence alignment