Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   M9H69_RS09855 Genome accession   NZ_CP097843
Coordinates   1962480..1963142 (-) Length   220 a.a.
NCBI ID   WP_250315524.1    Uniprot ID   -
Organism   Streptococcus oralis strain HP01     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1957480..1968142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M9H69_RS09835 (M9H69_09835) - 1958270..1959448 (-) 1179 WP_250315523.1 acetyl-CoA C-acetyltransferase -
  M9H69_RS09840 (M9H69_09840) - 1959467..1960315 (-) 849 WP_025172369.1 3-hydroxybutyryl-CoA dehydrogenase -
  M9H69_RS09845 (M9H69_09845) - 1960396..1961604 (-) 1209 WP_000201481.1 acyl-CoA dehydrogenase family protein -
  M9H69_RS09850 (M9H69_09850) raiA 1961852..1962400 (-) 549 WP_000599116.1 ribosome-associated translation inhibitor RaiA -
  M9H69_RS09855 (M9H69_09855) comFC/cflB 1962480..1963142 (-) 663 WP_250315524.1 ComF family protein Machinery gene
  M9H69_RS09860 (M9H69_09860) comFA/cflA 1963139..1964437 (-) 1299 WP_250315525.1 DEAD/DEAH box helicase Machinery gene
  M9H69_RS09865 (M9H69_09865) - 1964494..1965129 (+) 636 WP_250315526.1 YigZ family protein -
  M9H69_RS09870 (M9H69_09870) - 1965145..1965588 (+) 444 WP_250315527.1 PH domain-containing protein -
  M9H69_RS09875 (M9H69_09875) cysK 1965685..1966611 (+) 927 WP_000158480.1 cysteine synthase A -
  M9H69_RS09880 (M9H69_09880) - 1966827..1967355 (+) 529 Protein_1908 transposase -
  M9H69_RS09885 (M9H69_09885) - 1967726..1967938 (-) 213 WP_350027869.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 24992.96 Da        Isoelectric Point: 8.5587

>NTDB_id=692959 M9H69_RS09855 WP_250315524.1 1962480..1963142(-) (comFC/cflB) [Streptococcus oralis strain HP01]
MNCLLCGQTTKSELTFSSLFFLKNESSYLCLACDSTFEKIGEDHCPNCMKTRSSTKCQDCKFWCKEGVRVDHKAIFTYNQ
AMKDFFSRYKFDGDFLLRKVFASVLAEELKKYKGYQFVVIPLSPGRLLERGFNQVEGLVEAAGFSFKDILGKREESASSS
KSRLERLATEIPFFIKDGISLPKKILLIDDIYTTGATVNRVKRLLEEAGALDVKTFSLVR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=692959 M9H69_RS09855 WP_250315524.1 1962480..1963142(-) (comFC/cflB) [Streptococcus oralis strain HP01]
ATGAACTGTTTACTATGTGGCCAGACTACAAAGAGTGAGCTGACTTTTAGTAGTCTTTTCTTTTTGAAGAATGAGAGCAG
TTATCTTTGCTTAGCTTGTGATTCTACTTTTGAGAAGATTGGTGAAGATCATTGTCCAAACTGTATGAAAACAAGGTCGT
CAACTAAGTGTCAAGATTGTAAATTTTGGTGTAAAGAAGGAGTTCGTGTTGATCATAAGGCAATCTTTACCTATAATCAA
GCTATGAAAGACTTTTTCAGTCGCTATAAGTTTGATGGCGATTTTTTGCTTAGAAAAGTTTTTGCTTCTGTTCTTGCTGA
GGAGCTGAAAAAGTATAAAGGTTATCAATTTGTTGTAATTCCCCTAAGTCCTGGAAGATTGCTTGAGAGGGGGTTCAACC
AAGTCGAGGGTTTGGTTGAGGCAGCAGGCTTTTCTTTTAAAGATATATTAGGAAAAAGAGAAGAGAGCGCTAGTTCTTCT
AAAAGCCGTTTGGAAAGGTTGGCTACTGAAATTCCATTTTTTATTAAAGATGGAATCTCACTTCCTAAGAAGATTTTGCT
GATTGATGACATCTATACAACAGGGGCTACTGTCAATCGTGTGAAACGACTTTTGGAAGAAGCAGGTGCTTTGGATGTTA
AAACTTTTTCCCTTGTAAGATGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(180-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

80.909

100

0.809
  comFC/cflB Streptococcus mitis NCTC 12261

80.909

100

0.809
  comFC/cflB Streptococcus pneumoniae TIGR4

79.091

100

0.791
  comFC/cflB Streptococcus pneumoniae Rx1

79.091

100

0.791
  comFC/cflB Streptococcus pneumoniae D39

79.091

100

0.791
  comFC/cflB Streptococcus pneumoniae R6

79.091

100

0.791
  comFC Bacillus subtilis subsp. subtilis str. 168

35.526

100

0.368